Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02191 ATGTTTCACACAAACATGTTTGATTCTCACCCTAACATGCTTGATATGTCACCCCACAAAACTACTTTCTCTGAGACTGACCTGGGAAAGCCCAGAGATGATGAATATGAGACAAAGTCTGGCACTGACATGGACGCTCCTTCCGGCGACGATCAAGACCCCAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAGATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTAAGCCGAGATTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAGCATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAACGAAAAGCTTCGAGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCCCTTGGCGAAATGTCCTTCGACGAACAGCACTTGAGGATTGAGAACGCTCGGTTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAGTACGTTGGAAAGCCCTTGACGTCTTCGTACTCCAACCTTTCATCACTCAACAACAATCACAAGCCTGTCGGTAACTATGGAGCACAGTCAGGCACGGTAGGAGAAATGTACGGTGGAAGTGACCTTTTTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACTCTTTATGGGTCCCCGGGAACCACCACTCTGAGATTCTGAATGAAGAAGACTGTTTGAGGACTTTCCCTAATAGGGGTTTAGGTCCCAAACCTCTGGGCTTGAGATCTGAAGCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTGATTGATATCCTTATGGATGTGAACCAATGGTCAACTATGTTTTGCGGTATTGTCTCAAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCCGAGTTCCAAGTCCCTTCACCGCTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTGGATGTTTCTTTGGATAATCTGCGACCCAGTACGATCTCAAGAAGCCGAAGAAGACCCTCTGGATGTTTAGTTCAAGAATTGCCAAATGGTTACTCCAAGGTCACATGGATCGAACATGTAGAAGTGGATGACAGGGCGGTTCATAGCATATATAAAACCCTAGTCAATTCCGGTCTCGCCTTTGGAGCTAAACGCTGGTTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGAATCTCTGTGTGATAACCAGTGTTGAGGGAAGAAAAAGTATGTTGAAGCTGGCAGAGAGAATGGTTATTAGCTATTGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACACTATCCGCAACTGGATGTGATGACGTGAGGGTCATGACTAGAAAGAGCACTGATGAACCTGGCAGACCACCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTACGCGATGAAAACTCAAGAAATGAGTGGGACATTCTTTCTAATGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGCCGTGATCCTGGCAACTGTGTCTCCCTACTTCGAGTCAATGTAAGTTGCTGCTATAGCATTCCAAGTGCAAATTCAAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTCTACTGGGTCATATGTAGTTTATGCTCCTGTGGATATTGTAGCTATGAATGTAGTATTGGGTGGAGGGGATCCAGATTATGTTGCCCTGCTTCCCTCAGGCTTTGCTATTCTTCCTGATGGGCCTGGAATGAATGGTGGGTCAATACTTGATGTTGGATCAGGAGGTTCTCTACTCACAGTTGCCTTCCAGATCTTGGTTGATTCAGCCCCAACAGCAAAACTATCTTTGGGTTCAGTTGCTACTGTTAACAGCCTAATTAAGTGCACAGTTGAAAGGATCAAGTGTTATAACAAGGGTAGTAGAGTTGAAATTAACAAGCTCAGAATGGTGCCTATTTCGTTTTCAGAAGAGGGAAAGAAGTCAATGAACGCACCTCGGCGAATCACTTCAATATGGTAG 2295 0.4649 MFHTNMFDSHPNMLDMSPHKTTFSETDLGKPRDDEYETKSGTDMDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPLTSSYSNLSSLNNNHKPVGNYGAQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGNHHSEILNEEDCLRTFPNRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLVQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWLATLDRQCERLASSMANNIPAGNLCVITSVEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNVSCCYSIPSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGMNGGSILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKCYNKGSRVEINKLRMVPISFSEEGKKSMNAPRRITSIW 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02191 764 SUPERFAMILY Bet v1-like 239 469 - -
Vimu7g02191 764 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Vimu7g02191 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 726 IPR042160 -
Vimu7g02191 764 CDD homeodomain 60 118 IPR001356 GO:0003677
Vimu7g02191 764 Pfam START domain 248 467 IPR002913 GO:0008289
Vimu7g02191 764 SMART START_1 247 467 IPR002913 GO:0008289
Vimu7g02191 764 FunFam Homeobox-leucine zipper protein GLABRA 2 247 466 - -
Vimu7g02191 764 SUPERFAMILY Bet v1-like 489 729 - -
Vimu7g02191 764 Gene3D - 47 133 - -
Vimu7g02191 764 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Vimu7g02191 764 FunFam Homeobox-leucine zipper protein HDG1 48 133 - -
Vimu7g02191 764 MobiDBLite consensus disorder prediction 25 58 - -
Vimu7g02191 764 CDD START_ArGLABRA2_like 242 466 - -
Vimu7g02191 764 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Vimu7g02191 764 SMART HOX_1 59 121 IPR001356 GO:0003677
Vimu7g02191 764 SUPERFAMILY Homeodomain-like 44 117 IPR009057 -
Vimu7g02191 764 Coils Coil 111 146 - -
Vimu7g02191 764 Gene3D - 313 468 IPR023393 -
Vimu7g02191 764 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Vimu7g02191 764 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02191 Vimu-Chr7 19278711 19282112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02191 1 727 Homeobox Transcription Factor Family AT4G21750 74.967 0.0 1149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu7g02191 START 2.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02191 K09338 - gmx:100815499 1331.62