Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02169 ATGGAGCCTATTGAGGAGATCTCCCAAGAATGGATGAGTTGTCTTAGTGAAGTGTACACAGAGGAGGAAGCTGACTTCATGAACCAGCTGCTTGGTAACTGCTCAATCCCAGAACAGTTATATGAAAGTTTGAACATGGAAACAAAAGCTCCAAATGTAGATTCTGTCCTGTTTTTACAAGGGAGTGGGCCCTGTGCTCATGCTACCAAATATATCTTTCCCACAACAAATGCTGCCAACTGCTCTAACAATTTGGGCCACGTGTCCATTGGTTTTTCCTTCCAAGAGTTGGGTCTTGACTCAGGGAGAGAGAATCTTGCTGACATGGATTTGCAGGATCACAATGCAGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAGAAAAGGTTCAGGAGCTCATTTGAGGGCCCAGAGAACAAGAGAAATGTGAAATCTAAGAAGAATCCAAAACAAGCTTCTTTAAGGAACACTGAAGAGGAAGAAAGTCCTGACCCTCAGAGTCAGACCTTAAACAGTAGCTGTTCAGATGATGACTCCAAAGATTCTAGAGCGCTGAAGTTAAGTAGAAAATCAAGATCTAATAGAGACCCTGCAACTGATCCACAGAGCGCGTATGCAAGAAAGAGAAGAGAAAGAATAAACGAAAGACTGAGAATTCTACAGAGCCTAGTCCCAAATGGAACTAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTAAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGCATGGAACTTAACATCAACATCACAAAACAAGAAAAAAAATGCATATCATAG 870 0.4138 MEPIEEISQEWMSCLSEVYTEEEADFMNQLLGNCSIPEQLYESLNMETKAPNVDSVLFLQGSGPCAHATKYIFPTTNAANCSNNLGHVSIGFSFQELGLDSGRENLADMDLQDHNAEKDNTRSMEKSEKRFRSSFEGPENKRNVKSKKNPKQASLRNTEEEESPDPQSQTLNSSCSDDDSKDSRALKLSRKSRSNRDPATDPQSAYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGMELNINITKQEKKCIS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02169 289 SMART finulus 204 253 IPR011598 GO:0046983
Vimu7g02169 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 264 IPR036638 GO:0046983
Vimu7g02169 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Vimu7g02169 289 CDD bHLH_AtIND_like 199 261 - -
Vimu7g02169 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 274 - -
Vimu7g02169 289 MobiDBLite consensus disorder prediction 112 209 - -
Vimu7g02169 289 FunFam Basic helix-loop-helix transcription factor 199 256 - -
Vimu7g02169 289 Pfam Helix-loop-helix DNA-binding domain 208 248 IPR011598 GO:0046983
Vimu7g02169 289 Gene3D - 200 256 IPR036638 GO:0046983
Vimu7g02169 289 MobiDBLite consensus disorder prediction 177 209 - -
Vimu7g02169 289 MobiDBLite consensus disorder prediction 112 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02169 Vimu-Chr7 19174402 19175592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02169 165 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 67.188 5.66e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g02169 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02169 - - var:108319891 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02169 7 19174402 19175592 Vimu7g02169 7 19174402 19175592 ECH
Vimu7g02169 7 19174402 19175592 Vimu3g03349 3 46881191 46889510 PCT