Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02145 ATGGAGGAAGATGAAATGGTTTGGTGTTCGTCTGATTCTTGTTCTTCTAATTCGGGAGAGGAAGATATCGAAGAACGGAAATCTGATTTTTGTTCTTCTGATTCGGGAGAGGAAGATAACGAAGAACGGAAATCGCAGAACGTGGATGCACTAGTAAGGGGTAATCTTGTCGTGAAGAGACAGTCGCTGCTACCGCGGCTTCTTTCAGTATCGCAAGGGGCGGCCGTGTGTAGAAAACCCTTTAAACCTCCATCCTCCAAAACTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCCATCTCCGACTTCCAATTGAACGTATCGGTAACTAACGTTGATGTTCCTGTTTCTGAGGAGCCGAAACCATCTCTGCCCCCGGGGATCGACCCTTTAGTACTGTGGCACCCTCAAGACTCCCACGATGACCCCTCTAATACTAATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTCGATTGTGTCTCTGGTCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAAGCCATTGGTTAGAAAATCTATCATAGTGACTCCTACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGAGTTCGTCTTGTCGCTCTATGTGAGAGTTCAAGAGAAGATGTTGTCTCTGCGATTGACAGTTTTACGAATCCCGATAGAAATTTACAGGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTAACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCTCTTCCCTGCAAACGAAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTCAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCGGCCACTGTTGAAGAGAAGAAGATAGGTGCTGAACGCTCTGCTGAATTAAGTGTCAATGTTAATAGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCATTACAGTCAGACCTATATAAACATTTTATACAATCGAAAAATGTGAAGAGGGCAATTACTGATAAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGCAGCCCAGGAACTTCAGGTTTTGAGGAATGTATCCGGTTCTTCCCGCCTGAAATGTTATCTGGAAGGTCTGGCTCGTGGACCGGAGGACATGGAGCATGGGTTGAACTATCCGGAAAAATGCATGTCTTGGCAAGATTACTTGCTCATCTACGTCACAGAACTAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATCGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAACCCAGCTAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCTGGAACTATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGCCTTGTGTCTCAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGAAAACATCAAGTCAGAGATTCATGAAAAGATGCGATGCAGTCGATGTGAAACACATGGTGGTCCTCAAAACACTGATGCCCAATCAACAGCAGCTAATGAATCGGGAGAAGAAACCTCCGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAAATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCACTTTTTACCTAATTCAGTACCAGATGCCACCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCATCGAGTCTAACATGAGTCCCAAGCTACAGAAAAAGGAACCAAGTAAGGAATTACTCAAATCAATGCCCACTCCTATTTCTTTGCAGAACAGATTACCGCTGCAGTCTGCTTCTGGTGTTGCTAGTATGTCATCATCCACTCCCAATGTAAATTCTGTGGGGATTAGCAAAAACATCTCCAATTATTCTCTTGTTAGTAAAGTATTACCACACAAAAGATCACGTCCTGCTAATATCAGTTATAGTAATTTTAAGTAA 2601 0.4218 MEEDEMVWCSSDSCSSNSGEEDIEERKSDFCSSDSGEEDNEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKTHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAISDFQLNVSVTNVDVPVSEEPKPSLPPGIDPLVLWHPQDSHDDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESSREDVVSAIDSFTNPDRNLQVLIVSYETFRMHSSKFSSSNSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATVEEKKIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITDKLKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEECIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRHRTNDRIVLVSNYTQDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVSQGNFLSTEDLRDLFTFHENIKSEIHEKMRCSRCETHGGPQNTDAQSTAANESGEETSDIGGFAEIAGCLQNLKKSEKQVGSPLEEDLGSWGHHFLPNSVPDATLQASAGDEVTFVFTNQVNGRLVPIESNMSPKLQKKEPSKELLKSMPTPISLQNRLPLQSASGVASMSSSTPNVNSVGISKNISNYSLVSKVLPHKRSRPANISYSNFK 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02145 866 FunFam DNA repair and recombination protein RAD54 151 422 - -
Vimu7g02145 866 SMART ultradead3 178 381 IPR014001 -
Vimu7g02145 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 373 IPR014001 -
Vimu7g02145 866 CDD DEXHc_RAD54 182 423 - -
Vimu7g02145 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 661 IPR001650 -
Vimu7g02145 866 MobiDBLite consensus disorder prediction 690 709 - -
Vimu7g02145 866 Pfam SNF2-related domain 185 491 IPR000330 GO:0005524|GO:0140658
Vimu7g02145 866 MobiDBLite consensus disorder prediction 19 46 - -
Vimu7g02145 866 CDD SF2_C_SNF 534 622 - -
Vimu7g02145 866 Gene3D - 155 422 IPR038718 -
Vimu7g02145 866 MobiDBLite consensus disorder prediction 1 46 - -
Vimu7g02145 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 688 IPR027417 -
Vimu7g02145 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 423 IPR027417 -
Vimu7g02145 866 Gene3D - 445 524 - -
Vimu7g02145 866 PANTHER SNF2/RAD54 FAMILY MEMBER 47 564 - -
Vimu7g02145 866 Pfam Helicase conserved C-terminal domain 547 610 IPR001650 -
Vimu7g02145 866 SMART helicmild6 539 611 IPR001650 -
Vimu7g02145 866 MobiDBLite consensus disorder prediction 689 711 - -
Vimu7g02145 866 FunFam Predicted protein 445 519 - -
Vimu7g02145 866 Gene3D - 561 713 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02145 Vimu-Chr7 19055083 19066585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02145 532 670 RAD5 or RAD16-like Gene Family AT5G22750 34.532 1.74e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu7g02145 SNF2_N 5e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02145 K10875 - gmx:100781631 1400.19