Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02099 ATGTCATTGTGTACTTCATGTTTTGTTCTAGGGGCAATCAATGATGATTTATACAAGGAGTTGTGGCATGCCTGTGCTGGTCCCCTTGTCTCTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCGATGCACGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCCGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGTAGATCAAAGTGAGGTGACGAGCCCTGATGATCCTTTGACTGAAATTCCAAGGGCCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACACGCCGATGATTGTCTGCCTCCATTGGATATGTCACAGCAACCACCATGGCAGGAATTGGTTGCAACTGATTTACACGGGAATGAATGGCATTTTAGACATATTTTTCGAGCAAAGGGTTCTATAAGAATAAATTCGATGTTTATTTATATTGTCAATAAGTTCCTGAATGAACTGAGTAATGTCCAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTGATGAGACAGCAGAGCAATGCGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTAGGTGTTCTGGCCACTGCATCTCATGCCATTACCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGCGTCAACAACTATCTGGAAGCTCAGAGCCATAAACTCTCTGTCGGGATGAGATTCAAAATGATATTTGAGGGTGATGAAATTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATCGGTATGGCCTGATTCCGAGTGGCGATCCTTAAAGGTGCAATGGGACGAACCATCGTCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACATGTCTCTACCACTCCTGCAAACCCGCAGCCAACACAAAGAAACAAGAGGGCACGACCTCTTATTCTACCTTCTACAGTGCCTGATTCTTCTTTGCAAGGGATGTGGAAATCTGCCGCCGAATCTACATCTTTCTCTTATTGTGATCCTCAACATGGACGTGGCCTCTATCCATCACCAAAGTTCAATCCTTCTGCAACTAATTTTATTGGTTTCAGTGGGAATAGCTTTGTGGTACCTCCTTCCAACAAATCAATATATTGGTCTAATAGAATGGAAAATTCCTTGGAATCAATTTCAGCTATAGCCTTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGCAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGGAAGTCTACAAACAATCTCTTTATCTGGAAGGCTGGGTGATGATAGGTTTATTCCATCATTAGATGTTGAATCTGATCAGCATTCTGAGCCATCAAATGCCAATCGATCTGATATCCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGTCTCCGCAAGAGTCGCAAAGCAAACAAATAAGGAGCTGTACAAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACACGATTTTGTGGATACGAAGATCTGCTCATGAAATTAGAAGAGATGTTTGACATCAAGGCTGAGCTGTGTGGGTCCATAAAAAAATGGCAGGTTGTCTACACTGATGATGAAGATGATATGATGATGGTTGGAGACGATCCATGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACGACAGAGGAGGTGAAGAAGCTCTCCCCGAAAATAGGACTTCAAGTTAATGAAAAATTGAAAGCAAACAAGCAGGATTGGGAAGAAATATTCAATCCTGAGGAGCAGTCGTCTAATGTGGGGCCCAGTTGCTAG 2043 0.4351 MSLCTSCFVLGAINDDLYKELWHACAGPLVSLPREGERVYYFPQGHMEQLEASMHEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPEVDQSEVTSPDDPLTEIPRAKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRAKGSIRINSMFIYIVNKFLNELSNVQGNPSATYLPLGGVSLGENGELRVGVRRVMRQQSNAPSSVISSHSMHLGVLATASHAITTGTLFSVFYKPRTSRSEFIVSVNNYLEAQSHKLSVGMRFKMIFEGDEIPERRFSGTIVGVGDNKSSVWPDSEWRSLKVQWDEPSSILRPDRVSSWELEPHVSTTPANPQPTQRNKRARPLILPSTVPDSSLQGMWKSAAESTSFSYCDPQHGRGLYPSPKFNPSATNFIGFSGNSFVVPPSNKSIYWSNRMENSLESISAIAFKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTISLSGRLGDDRFIPSLDVESDQHSEPSNANRSDIPSVSCDAEKSCLSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFCGYEDLLMKLEEMFDIKAELCGSIKKWQVVYTDDEDDMMMVGDDPWDEFCSVVRKIFIYTTEEVKKLSPKIGLQVNEKLKANKQDWEEIFNPEEQSSNVGPSC 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02099 680 Pfam Auxin response factor 258 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu7g02099 680 CDD B3_DNA 120 183 IPR003340 GO:0003677
Vimu7g02099 680 Gene3D - 551 645 - -
Vimu7g02099 680 Gene3D - 119 234 IPR015300 -
Vimu7g02099 680 ProSiteProfiles PB1 domain profile. 556 649 IPR000270 GO:0005515
Vimu7g02099 680 FunFam Auxin response factor 295 367 - -
Vimu7g02099 680 Pfam AUX/IAA family 552 646 IPR033389 -
Vimu7g02099 680 Gene3D - 295 368 - -
Vimu7g02099 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 645 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu7g02099 680 SUPERFAMILY CAD & PB1 domains 558 633 - -
Vimu7g02099 680 FunFam Auxin response factor 551 645 - -
Vimu7g02099 680 SUPERFAMILY DNA-binding pseudobarrel domain 110 261 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02099 Vimu-Chr7 18619205 18626868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02099 11 679 B3 DNA Binding Superfamily AT1G59750 65.385 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02099 K14486 - gmx:100815450 1151.73