Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02093 ATGGAAGAGATTGGATATGTAATGCCCACAGATATCCAGAGGGAAGCTCTGCCTTACCTTTTTTCCGGGCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATTCACTCCCTCATCAATGCTGCAAAATCCTCTGTGCAAGCTCTAGTTGTTGTGCCCACCCGAGAACTCGGAATGCAAGTAAGAATGTATTGGAGCTATGATGTCATAATAGTACGTTGCTTATTTTTACTGCAACATGTCAGGGGTAATTCCCTTGGCAAGGGCCACTACGAGACATTGGCTGCAAAGCCAACTGGAGTTGTTGGGGAGCACAAGTCATGTTCTATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACAGAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTGTTGATGAGGCAAGAGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGACGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCCGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACGTCCCTTCTGATTGACTTTTTAAAGACATCGTACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCGCGAGCAGCTTCACTGCTTGAGGTTAGAAAAGGAGGTGGATATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGGGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTGTTGATTATCTTCATCGAGCAGGCCGAACATGCAGGAAGCCTTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGACGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGACTGCGAAGAGCTTATTATTCCATAA 1245 0.4289 MEEIGYVMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSLINAAKSSVQALVVVPTRELGMQVRMYWSYDVIIVRCLFLLQHVRGNSLGKGHYETLAAKPTGVVGEHKSCSIMALLDGGTLKRQKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIVDEARVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFDCEELIIP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02093 414 CDD DEADc 1 211 - -
Vimu7g02093 414 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 404 - -
Vimu7g02093 414 Gene3D - 241 411 IPR027417 -
Vimu7g02093 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 379 IPR027417 -
Vimu7g02093 414 SMART ultradead3 5 248 IPR014001 -
Vimu7g02093 414 Pfam DEAD/DEAH box helicase 10 211 IPR011545 GO:0003676|GO:0005524
Vimu7g02093 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 414 IPR001650 -
Vimu7g02093 414 Pfam Helicase conserved C-terminal domain 256 375 IPR001650 -
Vimu7g02093 414 Gene3D - 1 225 IPR027417 -
Vimu7g02093 414 SMART helicmild6 293 377 IPR001650 -
Vimu7g02093 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 17 227 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02093 Vimu-Chr7 18561096 18566059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02093 5 402 Eukaryotic Initiation Factors Gene Family AT1G72730 26.185 9.28e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02093 - - gmx:100786205 699.508