Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02078 ATGGATTACGAAGAACCTCCTCCGTCTCCCTCTATCCGCTCTTCCTCCCTTCTCAAGGACATCTCCAACTTCACCACGCCCAGACGGCCACCTTTCTCTCTCACCACCGCCCCATCTCCCGCCACTCAATTCTTCACCGCCTCCAAACACGCACCCACTTCCTCTTCCTTCCACCGCCGTCCCAACAAAGCATCCACTGCCACCGCAGCCAAGAAATTCAAGGCCTTCCAATTGGACCAGTCTCAGTCCTCCCGTAAGGCTCAAATCAAGAAGGAGCGCTCCCTCAAATCCCTCGCCAAGTCTCTCTCAGTATGGCTCAACTTTCTCCTCCAAAATCCTAATTCATGTGGCTGCCACTACTCAGCCGCAGATGCTTCCGCTCCCACTACCAATGGCAAGCGAGACGGCGCCCCGGTAATCTCCGTCGTCGGCGTCGATTCCGCCTGGCGCACTCCCAAGCGCCAGAGGAAATCCTTGTCCAGTAAGGAAAATGCTGGGTCGGTTGCTGAGGTTCCTGATTCCTCATTCTCGCACCTCAGGGATTCTCTCAAGGACGTTTGCAGTTTTGATGATTTGAATCAGCGAATGAGCTTGTATTTCAGCCTCGCAGCTTGTAAGGAGATCTTCCTTCAAATGAATCGCGTCGCCAAGACAATTGACGAAGGAAGACTGAATATGAAGGCACATTGCCCTATAGTAACTGATGTTGGCTTGAAGGATAAGGCCACAAGAATTCTCACGTGTTATAATTCTACTTGGTTGCGGATTGGATTGTATGTAATTTTTGGGGGTGATTCCCTGGTGTTAAATGGTGATGTGGATTCTGATCATGATGCTGTGTTCTTGAGAATGGTCGTTGACAAGTTATTTTTTTCTCATGAGGGTTTAGCTAAAGCTTATGCTTATAACAAAATGGTTGAAGGCGTGTATAGGTCAGGTTACTATGAGAATTTGGGGAATGTGATATTGAAAAGAATTTTGTTGCTTGTGCTTGTTCTGGATAAAGCTAAATGCCAGAGTTACCTCCCTCTGGAGTATGGTATTGATGGATTGGATGGGGGCTCTCCTCTGTTATTCAAACCAGAATCCTGGATTAAATCAAGTAGTCAGCTGATTCATGAATTTCTATCATCTGACGTAATGCATGGAGAAGGCAATCTTCTAACACATTTGGTGATTTTAGGTTACAAATTATCTCATCAACAGGAACCTCTTGTCGAGTATGATTTCAGGATCAGAGATTTATTTGTAGATCTCCAAGATGGATTAAAACTGTGTAGAGCTATTCAGCTCTTGCAGCATAATTCTTCGATCCTCATGAAAATTCTAGTCCCCTCTGATACTCCTAAGAAAAAATTAGCAAACTGCAGTCTTGCCCTGCAATATATTAGGCAAGCTGGTGGGTCACTAGTTGATGAAGATGGCATGATGATTGTGGCAGATGATATTGCTAATGGAGACAAAGAACTTACAGTTTCCTTGCTCTGGAATATATTTGTTCATTTGCAGCTACCTCTTTTGGTTGATAAAGCAAGTTTAGGAGGGGAAATTTCTAAAATTCAAGGAGGCAAGGTTCCCGTAAACATTGCAAGTTCTAGCTCTATGGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTGACAACTATGATTGTGAAATCGACAATTTCCATTCCCTTGTTGATGGCAAAGCTGTCTGGTGCTTACTTGATTATTACTTCCAGAAAGAACTTCAAAATTCTTGTTCGTTGAAGGTACTTCAAATTAGCGAGCTACTTCAATATAATGGTGCTTGCAGTGACCGAAGTGTGGTGATTTTGTTGGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAATTTGGATCACTTAAATTTCCACAAACTCTTGGGTGATGACTGCCAAAGTCTGAACCATAGAAATTTGAGGATGCTAAGGTGCCTTTCAAATTCTGAATCCATACAAAAGCCTGATGCTTCCGATGTGCTTGACAATGAAGATGCTTCAAGAAAATTCAAGGCCATCCAAACTTGGTGGAAAGACATGGCTGAAAGAAACGGTGTCAACAAACAAGCTGCCCCTAATTTGAAGGGATCAAAAATCACTGAATGCAGCACCAACATCAGAAGAGTTAACAATTGGTACTTCACATTTTTAGAAAATGCTACAAAAACAATACAACTGCATCTCAGAGGATGGGTTGCACGGTGCAAGTTTCTGAAGATGGTAAATTCTATTACCCTTTTGCAAACTGTTTTCAGAGCTTGGCTAAAAGTGAGGCAAAAGTCAGCCTGTGTGATATTATCTACTGTTCAAGGCTGTGACTCTTCTTGTGAAATATTGAAGCAATCAGAAACATATAAGAGATATGTCATGTTTTTCATGTATAGACGTTCCTTTTTGAGGTTAAAGAGCTCAGCACAGATTATCCAGAAAGCAGTTAGGAGTTGGCTCTATAGGAGGCATAAGAAAGAGACTAGTACAAATCCGGATCTTTTGATTTCAGATATGGTAGTGGCTGCTCTTAATGTTCAGAAATTGGTCCCTGGTGGGATGGCACAATCTAGATATATTCATCAGCTAGATCAGAGAGAGAAAGACTTTTCCCAACTGAAAGTCACTTTACATCTTCAAACAAATGCAGCCACTATCATTCAGCTTGCTTGGAAAAAGTTCATGTGCTGCAAGTCTGCTCAGAAGCAACACCTGTTTGCAACTAAAATTCAACGAAATTTCCGTAGTTGGTTATTGAGAAAAAGTTTTTTAGAGCAGATTCAGGCTGTCGTAAAGATTCAATCTTATTTTAGAATGTGGAGATGTGTGAATGCTTTTCAGCTCTTCAAGATTGAATTTAAGGCAGCTGTTGTTATTCAATCATGTATGCGGGGTTGGTTGGCCCGAAAGATTGCTGGGGCACGTAGGAATCACTTATTTGCAACTAAAATTCAGTTAAATTTCCGCAGGTGGTTGTCGAGAAAAAGGGTTTTAAATCAGATTCAATGTGTCATAAAAATTCAATCATATTTTCGAATGTGGAGATGTTTAAATGCTTACCAGCACTTCAAAATTGAGTTTAAAGCAGCTGTTATCATTCAGTCTTGTTTACGGGGCTGGTTTGCCCGAAAAGATGCTTGTACGCGTAGGAAGGACATTGTTGAGATTCAAAGGCACTGCCGTGGTTGGCTTGTAAAGAGGGACTTCTTGTTCCAAAAAGACGCTGTAATAAAGATCCAGTGTGTCGTTCGAAGTTTGAAGTGCCAAAAGGCTCTGAATTGCCAGAAAGATGCTGCTTTGGAGATCCAGCGCTTTATAAGGGGGCATGTAACTCGGAATCAGCTATTAGGCAGCGCTTCCAAGCTACGCACAGTTATTTCTGTTAGTTGCAGCTCAAGACCATTTGGCTTTTGTAGTTTTCAATTTGAACTGTTCTTGTTTTCGGTTGTGAAATTGCAACGATGGTGGAAGGGTCTCCTGTTTCTGAAGTTAATGAATAAATCGGCCATCATTATTCAGTCATGTACCCGTGGGTGGATAGCCAGGCGAAATGCTACTCTTTATAGAAGCCATGTTGTCATCCAAGAAGATGCCGCGTTGGTGATTCAACGCTACGTTAGGGGACATTTAACTCGACATCGGATATTAGGTGGTGCTTCTAACCTGAGTGCAATCACTTCTGTTGGCTGCATCTCAGGGCCAGTTGGCTGCCGTAGTTTTCCACCAGATCAAATTTTGCTTTCAGTTGTAAAATTACAACGATGGTGGAAGGGCCTCTTGTTACAGACATTGATGACAAAATCTGCTGTTGTTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAGAGGCTAATGTTCAGAGACGTCGGATTATTGTCATCCAATCCCACTGGAAAGGTTACCATGCACGTAAAGTTTCGAAAGAACAGTTGTTGGATTTGCGCTTGAGAATGCAGAAGTCTGCCAGAAATGTGGATGACAGCAAGCGTCTCATAAACAGACTCTTGGCAGCGCTTTCGGAGCTACTCAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCAATATTGGACATGGCTACAGGGCACTCTCAGAAATGTTGTGAAGAACTTGTGGCTGCCGGGGCCATTGATACTTTGCTGCGGCTGATTCAAACAGTCAGCCGGAGTATACCCGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCCGAAATCTCGCCCGCTATCCTCATCTTCTACAAGTGTTGATCCAAAGTCGTAGTTCTGTACAGATAATTGTCATGGAATTATTGAGGAATAAAAACGAGGGTTACTTCGTTGCTTCTGAACTTCTGAAGAAGATTTGTTCAACTGGCAAAGGCGTTGAGGCGATTTTGAAGTCCCCTGCTCTGCTAAAACGACTGCTAGGCCTTGTGGAGGACCTTAAACGGAAGGGAATTTACGAGAAAAGAAATTCTAGGACTCCTAACCTGGTTATCAAAGAAAACAGAGAGAGAAGATTGAAGGAGGCTGCTGAGATTGTTAAACTGATAACAAGGGCATGA 4545 0.4262 MDYEEPPPSPSIRSSSLLKDISNFTTPRRPPFSLTTAPSPATQFFTASKHAPTSSSFHRRPNKASTATAAKKFKAFQLDQSQSSRKAQIKKERSLKSLAKSLSVWLNFLLQNPNSCGCHYSAADASAPTTNGKRDGAPVISVVGVDSAWRTPKRQRKSLSSKENAGSVAEVPDSSFSHLRDSLKDVCSFDDLNQRMSLYFSLAACKEIFLQMNRVAKTIDEGRLNMKAHCPIVTDVGLKDKATRILTCYNSTWLRIGLYVIFGGDSLVLNGDVDSDHDAVFLRMVVDKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFKPESWIKSSSQLIHEFLSSDVMHGEGNLLTHLVILGYKLSHQQEPLVEYDFRIRDLFVDLQDGLKLCRAIQLLQHNSSILMKILVPSDTPKKKLANCSLALQYIRQAGGSLVDEDGMMIVADDIANGDKELTVSLLWNIFVHLQLPLLVDKASLGGEISKIQGGKVPVNIASSSSMELLLNWIQAVCDNYDCEIDNFHSLVDGKAVWCLLDYYFQKELQNSCSLKVLQISELLQYNGACSDRSVVILLVFLASQLFVKKNLDHLNFHKLLGDDCQSLNHRNLRMLRCLSNSESIQKPDASDVLDNEDASRKFKAIQTWWKDMAERNGVNKQAAPNLKGSKITECSTNIRRVNNWYFTFLENATKTIQLHLRGWVARCKFLKMVNSITLLQTVFRAWLKVRQKSACVILSTVQGCDSSCEILKQSETYKRYVMFFMYRRSFLRLKSSAQIIQKAVRSWLYRRHKKETSTNPDLLISDMVVAALNVQKLVPGGMAQSRYIHQLDQREKDFSQLKVTLHLQTNAATIIQLAWKKFMCCKSAQKQHLFATKIQRNFRSWLLRKSFLEQIQAVVKIQSYFRMWRCVNAFQLFKIEFKAAVVIQSCMRGWLARKIAGARRNHLFATKIQLNFRRWLSRKRVLNQIQCVIKIQSYFRMWRCLNAYQHFKIEFKAAVIIQSCLRGWFARKDACTRRKDIVEIQRHCRGWLVKRDFLFQKDAVIKIQCVVRSLKCQKALNCQKDAALEIQRFIRGHVTRNQLLGSASKLRTVISVSCSSRPFGFCSFQFELFLFSVVKLQRWWKGLLFLKLMNKSAIIIQSCTRGWIARRNATLYRSHVVIQEDAALVIQRYVRGHLTRHRILGGASNLSAITSVGCISGPVGCRSFPPDQILLSVVKLQRWWKGLLLQTLMTKSAVVIQSCTRGWIARREANVQRRRIIVIQSHWKGYHARKVSKEQLLDLRLRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSILDMATGHSQKCCEELVAAGAIDTLLRLIQTVSRSIPDQEVLKHALSTLRNLARYPHLLQVLIQSRSSVQIIVMELLRNKNEGYFVASELLKKICSTGKGVEAILKSPALLKRLLGLVEDLKRKGIYEKRNSRTPNLVIKENRERRLKEAAEIVKLITRA 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 900 929 IPR000048 GO:0005515
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1046 1075 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam Armadillo/beta-catenin-like repeat 1363 1408 IPR000225 GO:0005515
Vimu7g02078 1514 MobiDBLite consensus disorder prediction 1 39 - -
Vimu7g02078 1514 CDD CH_ASPM_rpt1 387 498 - -
Vimu7g02078 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1212 IPR027417 -
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1023 1052 IPR000048 GO:0005515
Vimu7g02078 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1072 IPR027417 -
Vimu7g02078 1514 Gene3D - 396 504 IPR036872 -
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1285 1313 IPR000048 GO:0005515
Vimu7g02078 1514 Gene3D - 972 1023 - -
Vimu7g02078 1514 Gene3D - 1070 1121 - -
Vimu7g02078 1514 Gene3D - 1260 1310 - -
Vimu7g02078 1514 Gene3D - 1024 1069 - -
Vimu7g02078 1514 Gene3D - 718 764 - -
Vimu7g02078 1514 Gene3D - 1160 1214 - -
Vimu7g02078 1514 SMART arm_5 1363 1408 IPR000225 GO:0005515
Vimu7g02078 1514 Gene3D - 1317 1510 IPR011989 -
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 718 746 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 999 1017 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1025 1042 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 978 994 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1050 1066 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 951 967 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 904 920 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 925 943 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1194 1211 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 720 738 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1164 1181 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1286 1303 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 804 821 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1263 1281 IPR000048 GO:0005515
Vimu7g02078 1514 Pfam IQ calmodulin-binding motif 1094 1112 IPR000048 GO:0005515
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 949 978 IPR000048 GO:0005515
Vimu7g02078 1514 Gene3D - 530 653 IPR036872 -
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1192 1221 IPR000048 GO:0005515
Vimu7g02078 1514 PANTHER UNCHARACTERIZED 39 822 - -
Vimu7g02078 1514 SUPERFAMILY Calponin-homology domain, CH-domain 328 580 IPR036872 -
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1092 1121 IPR000048 GO:0005515
Vimu7g02078 1514 Gene3D - 923 969 - -
Vimu7g02078 1514 Gene3D - 876 921 - -
Vimu7g02078 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 871 968 IPR027417 -
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1162 1189 IPR000048 GO:0005515
Vimu7g02078 1514 MobiDBLite consensus disorder prediction 9 39 - -
Vimu7g02078 1514 SUPERFAMILY ARM repeat 1331 1475 IPR016024 -
Vimu7g02078 1514 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1374 1407 IPR000225 GO:0005515
Vimu7g02078 1514 ProSiteProfiles IQ motif profile. 1262 1289 IPR000048 GO:0005515
Vimu7g02078 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1241 1307 IPR027417 -
Vimu7g02078 1514 Pfam Calponin homology (CH) domain 411 502 IPR001715 GO:0005515
Vimu7g02078 1514 ProSiteProfiles Calponin homology (CH) domain profile. 381 503 IPR001715 GO:0005515
Vimu7g02078 1514 SMART iq_5 899 921 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1284 1306 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 996 1018 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 876 898 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 948 970 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1161 1183 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1191 1213 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 740 763 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1022 1044 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1091 1113 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1045 1067 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1068 1090 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 1261 1283 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 922 944 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 973 995 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 717 739 IPR000048 GO:0005515
Vimu7g02078 1514 SMART iq_5 801 823 IPR000048 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02078 904 1098 Myosins gene family AT5G43900 31.472 4.90e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02078 K16743 - gmx:100817636 2392.85