Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02077 ATGGCCCAACAACCCAACCAACAATATCCACAACAGCAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCCGCAGCCCCCTCAGATGTGGGCCCCATCTGCCCAGCCTCCTCCTCAATCGGTGGCTCCTCCGCAGCCTACCAGCGCCGATGAGGTCCGAACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAAAACTACCTCTACACGTGTTTCGCACATACAGGCGAGGTGATTCTGAAGGTTGGTTACTCATATGGTATTTACTTGCAGGTGGCTTCGGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACCAGTCGTGCTGGTGCCGAGAGAATCCTTCAAACATACAACGGAACCATTATGCCAAATGGTGGTCAGAACTTCAGATTGAACTGGGCTTCGTTTAGTGCAGGGGACAGGCGTCATGATGACAGCCCGGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTCGGGCTCGGTATCCCTCCGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTCACTGGTCGTACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGACCCATGCGAATTGGACCCGCCTCTAATAAAAATCCCAGCACCCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACCGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGCGGATTTGTCCAATTTTCGGACAGGAGCTGTGCAGAAGAAGCTTTACGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCGAATCAGTGGAATGGAAGTGGTGGTTACTATGGATATGCTGCGCAGGGTTATGAAAATTATGGTTATGCTCCTACTGGACAAGATCCCAATATGTATGGCAGTTATCCGGGCTACGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA 1215 0.4774 MAQQPNQQYPQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVILKVGYSYGIYLQVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFSDRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGYYGYAAQGYENYGYAPTGQDPNMYGSYPGYANYQPPQQQQQIGYS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02077 404 FunFam Polyadenylate-binding protein RBP45 1 153 - -
Vimu7g02077 404 MobiDBLite consensus disorder prediction 236 268 - -
Vimu7g02077 404 MobiDBLite consensus disorder prediction 1 20 - -
Vimu7g02077 404 Gene3D - 153 247 IPR012677 -
Vimu7g02077 404 SUPERFAMILY RNA-binding domain, RBD 150 249 IPR035979 GO:0003676
Vimu7g02077 404 SMART rrm1_1 56 145 IPR000504 GO:0003723
Vimu7g02077 404 SMART rrm1_1 270 337 IPR000504 GO:0003723
Vimu7g02077 404 SMART rrm1_1 163 237 IPR000504 GO:0003723
Vimu7g02077 404 Gene3D - 248 351 IPR012677 -
Vimu7g02077 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 149 IPR000504 GO:0003723
Vimu7g02077 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 136 IPR000504 GO:0003723
Vimu7g02077 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 227 IPR000504 GO:0003723
Vimu7g02077 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Vimu7g02077 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 345 - -
Vimu7g02077 404 CDD RRM1_SECp43_like 56 150 - -
Vimu7g02077 404 FunFam Polyadenylate-binding protein RBP45C 247 375 - -
Vimu7g02077 404 FunFam Polyadenylate-binding protein RBP45C 154 246 - -
Vimu7g02077 404 MobiDBLite consensus disorder prediction 385 404 - -
Vimu7g02077 404 CDD RRM2_SECp43_like 161 240 - -
Vimu7g02077 404 Gene3D - 1 152 IPR012677 -
Vimu7g02077 404 MobiDBLite consensus disorder prediction 21 46 - -
Vimu7g02077 404 SUPERFAMILY RNA-binding domain, RBD 253 367 IPR035979 GO:0003676
Vimu7g02077 404 MobiDBLite consensus disorder prediction 1 50 - -
Vimu7g02077 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Vimu7g02077 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Vimu7g02077 404 MobiDBLite consensus disorder prediction 390 404 - -
Vimu7g02077 404 MobiDBLite consensus disorder prediction 233 268 - -
Vimu7g02077 404 SUPERFAMILY RNA-binding domain, RBD 18 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02077 Vimu-Chr7 18461436 18465448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02077 268 347 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 7.66e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02077 - - gmx:100796848 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02077 7 18461436 18465448 Vimu2g01085 2 7142390 7146032 PCT