Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02034 ATGGCCACGTCAACCACACCCCTGCTACTTTCATGCTTCATGGTACACCTTGCTTCAACCTTTGTTTTTGCTCATTCAACAGGCAACAACTACTACAACAACACTCCCCAACCTCTGTCAAAGTACATTCCTAAGAAACCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAGACCAAATTGGAGCTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGAGGCCACAGGAGGCAAATATGGTGCAATATACCATGTCTCCGATCCCTCTGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAAATGACCCACTCTGGATCATTTTCGACAAAGACATGGTCATTACACTAAAAAATGAGCTTATTATGAGTAGCAACAAGACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCTGATGGGCCTTGCATTACAATATCAAATGTTAGCCATGTTATCATACATGGCATTAGCGTCCATGATTGCGAACCGGCCAAGCCTGGCCTGAACACTCCTGACCATGTTGGCCATCGTTTAGGCTCCGATGGAGATGCCATCAGCATAATCGATTCCACCAATGTTTGGATTGATCATTGTTTTTTGGCTCGTTCCACCGATGGCCTGATCGATGTTATTCGTGCCTCAACCGCCATTACCATCTCTAACAATTACTTTACTCAGCACGACAAAGTTATGTTGCTAGGACACAGTGACCAATTCACAAAGGATAAAATAATGAAAGTGACAATAGCCTTCAACCAGTTTGCCAGTGGCCTAACTGAGAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATGTAGCACCGAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGTGAAAGAGAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTCAATGATGCTTATTTTGTACCCTCTGGAGTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATATTTTGCTGCTGCTCCAGCATACATGGTGCCTGCAATAACTCTCAATGCAGGCCCCACATATTGTACTATTGGGAGAGCATGTTAG 1185 0.4414 MATSTTPLLLSCFMVHLASTFVFAHSTGNNYYNNTPQPLSKYIPKKPLLNVIDSCWRARPNWSSNRQALADCAIGFGKEATGGKYGAIYHVSDPSDDPANPKPGTLRYGAIQNDPLWIIFDKDMVITLKNELIMSSNKTIDGRGAKVEIADGPCITISNVSHVIIHGISVHDCEPAKPGLNTPDHVGHRLGSDGDAISIIDSTNVWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYVAPNDPNAKQVTKREVKENWKSWKWRSSKDLFFNDAYFVPSGVGSCAPNYSPTQYFAAAPAYMVPAITLNAGPTYCTIGRAC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02034 394 PANTHER PECTATE LYASE 18-RELATED 46 391 IPR045032 GO:0030570
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 193 214 IPR018082 -
Vimu7g02034 394 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Vimu7g02034 394 Pfam Pectate lyase 130 312 IPR002022 -
Vimu7g02034 394 Gene3D - 49 387 IPR012334 -
Vimu7g02034 394 SMART amb_all 123 318 IPR002022 -
Vimu7g02034 394 SUPERFAMILY Pectin lyase-like 50 385 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02034 Vimu-Chr7 18234764 18236223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02034 9 394 Polysaccharide Lyase AT1G11920 62.564 2.56e-179 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02034 K01728 - gmx:100807483 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02034 7 18234764 18236223 Vimu7g02034 7 18234764 18236223 ECH
Vimu7g02034 7 18234764 18236223 Vimu2g01126 2 7446184 7447742 PCT