Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02032 ATGGATGTTGTTGTCCCAAGGAGAGAACGTTCAAAAACTTTGCAAACTGAGGATAAGCTGACATTGTCCAGATGCTCGAAAGTTTACAGAAAACCGAAGAGAAAAACTGAAGAAATGTCTGAGAATGGTGATAAGAAATCCGAACTGAAAGGAAAAGAAGGTGAGATGTGTTTAAAGAAGAATTGTGCAGTAAGAGTGACTAAGAAGAAGAGAAAGGTTCGAGAAAACTATATGTTTGATAATATAAAACCAAAGTTAGATGCCAAAGAAGATTCCTGTTTACCGAGGACAAGAAAACTACCATGCAAGAGAAGAGATGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATGAAGATGATTTCTTGAGTGGTGATGATTTAGAAGATGAAGAAATGTTTGTTATTTTAAGATCAAAGAACAGGAGCAGATTGAGAAGAATGAATGATGTGAAGGATGTTGAACAAAAGCCTCGAATTTGTCATCAATGCATGAAAAAGGAGAGAACACTTTTCGTGCCTTGTACTAAATGCCCAAAAATGTACTGTATGCAGTGTGCGGATAAATGGTACTCTGATTTGACAATAGAAGAAATTGCTGCAAGTTGTCCGTTTTGCCAGAAAAACTGCAATTGCAATGTTTGTTTGCGCGCAAGAGGAATGATTAAGGAAAACCTTTTGAGAAGGAAATACCTCGAAGTCTTTGTGGCAACGATGAACGTGTCTATTGGTAGTGATCATTGTGCTACTTCAATTATTGATCTTTATAGAAGCTGCCCCAGTTGTTCCTATGAACTCTGCCTCAGTTGTTGCCAAGAAATACGTGAAGGAAGAATTACACCCCGGATGGAGCAGAAGTTCTCATATGTTAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCTGTGTCTAATGATTTCAGGACATCAGAATGTCAAACCAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAATCATCCGATGTGCACCAAAGGAGTTGGGGGGTTGTGGCAGTGCTGCATTGGAGCTGAGACGTGTCCTACCAAGTGGCTGGATATCTGAATTGGAAATCAAAGCTCGCAGTACGCTGAAAATTTGGGAAGATGAAAACACAAATCTTAAGCTAGAAAAAGCAGCATCAAGCTACACCTCTTTGAGAAATAAAGCTATTAAAGAAGACATAAATGGTAATAATATGTACTGTTCAGAGTCAAGTAGCATTCAAAAAGAAGAGTTGTTGCTTTTCCAAAAACATTGGACTAATGGCGAACCAATTATAGTTCGTGATGCTCTTAAACTGGGGACCGGTCTGAGTTGGAAGCCGATGGTAATGTGGCGAGCATTGTGTGAAAATAGGGTTTCAGAGGTCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGAGCTTCAATTGCCATCTTAGTATTCCATCTTCTAAATTCCAAGTAGAAATCGATACTCGCACATTTTTCAAAGGTTATATTGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCTCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCACTGTGATGAGTTTATTCGCTCATTGCCATTCCAAGAGTACAGTGATCCTCGGAGCGGAATTCTCAATCTTGCTGCGAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCGAAAACTTATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTAACCCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACATAATTATTTCAAAGTTGAAAGAAGCACACAAGATACAAGATGAGAGAGAGCAGTGTGCTGAAGAAAGGGTTACCGACAGCCTGAAATGCCGAACTTTCAAAGACAACAAAGTACAGATAGAAAACAAGGTAGTTTTAGAATCCAATGACATCGAGAAGCGTCCTATTGAAATTAATGGAAGGATATTTACAAATGGTGTACATGAAGAGATCGCTTCTGCTATAGAGAATGAATCAACGGAAACAGGCAGTGCTCTATGGGATATCTTTCGAAGAGAAGATTCTAAGAAGTTAGAATCATATCTCAGGAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCAGTTGAACAGGTTGAACATCCAATTCATGACCAATGTTTCTATTTGACATGGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCTGTCTTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTTGTGTCTCCGGAAAACATCCATGAGTGTCTGCGTTTAACTAATGAGTTTCGCCAGCTTCCCAAGAACCACAAGGCTAGGGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGCTGCTTTGGTACTTCATTTTTCCTTGGTTGCTGATACTCTAGATTGTGTATATTAA 2589 0.3982 MDVVVPRRERSKTLQTEDKLTLSRCSKVYRKPKRKTEEMSENGDKKSELKGKEGEMCLKKNCAVRVTKKKRKVRENYMFDNIKPKLDAKEDSCLPRTRKLPCKRRDEKQKLTVSNKKRKYEDDFLSGDDLEDEEMFVILRSKNRSRLRRMNDVKDVEQKPRICHQCMKKERTLFVPCTKCPKMYCMQCADKWYSDLTIEEIAASCPFCQKNCNCNVCLRARGMIKENLLRRKYLEVFVATMNVSIGSDHCATSIIDLYRSCPSCSYELCLSCCQEIREGRITPRMEQKFSYVNRGYDYMHGGDPLPVSNDFRTSECQTKLSNVWNAKSDGIIRCAPKELGGCGSAALELRRVLPSGWISELEIKARSTLKIWEDENTNLKLEKAASSYTSLRNKAIKEDINGNNMYCSESSSIQKEELLLFQKHWTNGEPIIVRDALKLGTGLSWKPMVMWRALCENRVSEVSSKMSEVKAIDCLANCESFNCHLSIPSSKFQVEIDTRTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLAAKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHIIISKLKEAHKIQDEREQCAEERVTDSLKCRTFKDNKVQIENKVVLESNDIEKRPIEINGRIFTNGVHEEIASAIENESTETGSALWDIFRREDSKKLESYLRKHSKEFRHTYCSPVEQVEHPIHDQCFYLTWEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAAALVLHFSLVADTLDCVY 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02032 862 Pfam JmjC domain, hydroxylase 698 801 IPR003347 -
Vimu7g02032 862 ProSiteProfiles JmjC domain profile. 553 818 IPR003347 -
Vimu7g02032 862 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 159 227 IPR018866 -
Vimu7g02032 862 ProSiteProfiles Zinc finger RING-type profile. 163 209 IPR001841 -
Vimu7g02032 862 MobiDBLite consensus disorder prediction 31 49 - -
Vimu7g02032 862 SUPERFAMILY Clavaminate synthase-like 417 840 - -
Vimu7g02032 862 Gene3D Cupin 400 827 - -
Vimu7g02032 862 MobiDBLite consensus disorder prediction 30 49 - -
Vimu7g02032 862 CDD cupin_RmlC-like 742 802 - -
Vimu7g02032 862 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 247 845 IPR045109 GO:0032454|GO:0033169
Vimu7g02032 862 SMART cupin_9 534 818 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02032 Vimu-Chr7 18226541 18230511 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu7g02032 JmjC 5.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02032 K15601 K21989 gmx:100797860 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02032 7 18226541 18230511 Vimu7g02032 7 18226541 18230511 ECH
Vimu7g02032 7 18226541 18230511 Vimu2g01135 2 7490874 7494214 PCT