Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02023 ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGAAGCAAGAACCATCCTAGGTCTGTTAACGGACCAAATGGACGCCGTCGATGGAGCTCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGAATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACGCTAAGGGACGAAGGAGGACGACCACCACCACAACCACAAATACTACAACAAACAAACCCGGGTCAAGATTCGAACCCGAACAGGCCCGAATGCGTTGGTCCGAGAGGGTCGGGATCGGGCATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCTGCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAAAAGGAGGGTGGTGAGGATGCGGCTGTGGAGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTTCTGTAGAGTGTGTTCGAAAGAAATGTGGTTGAAGAGAGGTACTTGTCCCCTTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA 588 0.5493 MSQLGLILQESLRTEREARTILGLLTDQMDAVDGAQRRRRTLKERLRFSGMGCCGATWVFRPTLRDEGGRPPPQPQILQQTNPGQDSNPNRPECVGPRGSGSGMNLAAALAAERQLRESEEGRMSLMRLLEEKEGGEDAAVENDSVCCVCMGRKKGAAFIPCGHTFCRVCSKEMWLKRGTCPLCNRSVLDILHIF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02023 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 192 IPR013083 -
Vimu7g02023 195 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Vimu7g02023 195 SUPERFAMILY RING/U-box 141 191 - -
Vimu7g02023 195 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Vimu7g02023 195 SMART ring_2 147 184 IPR001841 -
Vimu7g02023 195 CDD RING-HC 147 184 - -
Vimu7g02023 195 MobiDBLite consensus disorder prediction 64 99 - -
Vimu7g02023 195 PANTHER OS01G0917900 PROTEIN 5 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02023 Vimu-Chr7 18128471 18129058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02023 21 195 C3H Transcription Factor Family AT4G22250 50.000 4.60e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02023 - - pvu:PHAVU_003G082200g 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02023 7 18128471 18129058 Vimu2g01157 2 7658244 7658879 PCT