Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02019 ATGAAGAAGGGCAATAACATGGGGAAATCAGGGGGTAGGAGAAAGAAGGGTGGTTCGAACCCAAACCAGGGTGTGGTTGATAATTCGGGTTCGGGTGTTGGTGTTCCAACGGCTAATGGTGGGTCGGAGTTGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGATGAAAGAGGAAGGGAATAGGAGGTTCCAGAATAAGGACTATCCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCAGCGTGTTTGATGCAGATGAAGCCCATAGATTATGAAGCTGTTATTTCTGAGTGCACCATGGCGCTTCAGGTCCAGCCCCGCTTTGTCCGGGCCCTTCTTCGTCGGGCCCGTGCCTTCGAGGCTGTTGGGAAGTATGAAATGGCTGTGCAGGATGTGCAGTTCTTGTTGGGTGCTGATCCTGGTAACCGTGATGCTTTGGAGATAGCCCAGAGATTGAGGACTGCGTTGGGGCCGCGCCAGGAAGCCCAGCAGGACCTCCAAAGTCGACCCTCTCCAGCTGCCCTTGGCGCTTCCGCCGTTCGTGGCGCCCCTATTGCTGGATTGGGGCCATGTTTGCCAGCCCGTCCCGTGGCGAAGAAGGGATCCAATTCAGCAGTTGGATCTGTTATTTTGCCTAATAATAACAAGCTAGACGGCAAGGCACAACCGGTTTTGCCGACTGAAAATGGTTCTGATAGCAAGTCCCACTTGCCAAAACTGGTGTTGAAGCCTTCAAGTGGTTCTTCAAAGCCATCTAACCCTGGAAAGGATGACCCCAAGGAACAGTCATCGGGCATTCATGGGCAGCGTTCTCAGGCTGCAATTCTGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTCGCACAGATGCCAGTCAATTGCAACTTTAGAGTGCTGAGGGATGTCGTGAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATCAAATATAAGGATTGCGATGGTGATCTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAACCATCTCCTCAAAGAACTTGGGGAAGTTAAAAGTGATTCTGTTTCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGTCAAGGGAGATGAGAGCGGATCTCATTCTTCCCTTGGTGAATCTGCCTCTGAAGTTCCTGACAGTGAGGTTGATAAGATAGGGAAGGAGGCTCCAAAGGAAAAGCCAGGAGCCACTGGAGATACTGAAAGCAAGGAGGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGACGCTCATATTGACTTGCATGAGCTTGGCATGGAGCTTTGTTCTGAGGCACTCGAGGAAACAGTAACTAGTGAGGAGGCCCAGGATCTGTTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTTGCTGCTTTAGCTTACTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATCCCTCTGGATGAGTCAGCTGGGAAAGAGGTAGTGGCTGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCGTTGGCAAGAGGGAAGTACGAGGAAGCACTCTCGATCAAATCAGACTTTTATGAGGGATTGTTGGCTCTCGGGCAGCAGCAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCTGGCTGGGACTCTAAAGAGACACTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAACTAGAGGAGCAAAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGATGAATTATTGAGAAGAAGAAAGAAACAAGGAGGTACTACTGAAGGTGAGTCCTCTACTGTTGGAGGTCAGGGTGATGTATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCTCAAATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTAGGAATGAGTGGTTGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTAGCAGGAGCTTCTGAGGCAGATATTTCAATGGTTCTAAAGAATCATTCCTCAAATGGAGATGCTAAAGATGGAGATGATAAAAAGGTTGAGAACACACGGCAGAATAAGGCCATTAAACCAGAGATCAATAAGGCTAATCAAGTATGA 2349 0.4742 MKKGNNMGKSGGRRKKGGSNPNQGVVDNSGSGVGVPTANGGSELLDSSIFLKKANEMKEEGNRRFQNKDYPGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVISECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLGADPGNRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGSNSAVGSVILPNNNKLDGKAQPVLPTENGSDSKSHLPKLVLKPSSGSSKPSNPGKDDPKEQSSGIHGQRSQAAILWRPLKLVYDHDIRLAQMPVNCNFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDNHLLKELGEVKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKPVENEGVKGDESGSHSSLGESASEVPDSEVDKIGKEAPKEKPGATGDTESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAYFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLARGKYEEALSIKSDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKDELLRRRKKQGGTTEGESSTVGGQGDVSAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKENLDAATERFKLAGASEADISMVLKNHSSNGDAKDGDDKKVENTRQNKAIKPEINKANQV 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02019 782 Gene3D - 298 370 - -
Vimu7g02019 782 MobiDBLite consensus disorder prediction 747 782 - -
Vimu7g02019 782 Pfam PB1 domain 296 387 IPR000270 GO:0005515
Vimu7g02019 782 SMART tpr_5 54 87 IPR019734 GO:0005515
Vimu7g02019 782 SMART tpr_5 128 161 IPR019734 GO:0005515
Vimu7g02019 782 SMART tpr_5 92 127 IPR019734 GO:0005515
Vimu7g02019 782 MobiDBLite consensus disorder prediction 428 454 - -
Vimu7g02019 782 MobiDBLite consensus disorder prediction 390 454 - -
Vimu7g02019 782 MobiDBLite consensus disorder prediction 1 41 - -
Vimu7g02019 782 Coils Coil 622 642 - -
Vimu7g02019 782 MobiDBLite consensus disorder prediction 642 668 - -
Vimu7g02019 782 SMART PB1_new 296 388 IPR000270 GO:0005515
Vimu7g02019 782 MobiDBLite consensus disorder prediction 642 688 - -
Vimu7g02019 782 MobiDBLite consensus disorder prediction 21 41 - -
Vimu7g02019 782 MobiDBLite consensus disorder prediction 231 289 - -
Vimu7g02019 782 Gene3D Tetratricopeptide repeat domain 50 175 IPR011990 GO:0005515
Vimu7g02019 782 MobiDBLite consensus disorder prediction 752 771 - -
Vimu7g02019 782 SUPERFAMILY TPR-like 51 185 IPR011990 GO:0005515
Vimu7g02019 782 ProSiteProfiles TPR repeat profile. 54 87 IPR019734 GO:0005515
Vimu7g02019 782 ProSiteProfiles PB1 domain profile. 296 388 IPR000270 GO:0005515
Vimu7g02019 782 SUPERFAMILY CAD & PB1 domains 296 365 - -
Vimu7g02019 782 PANTHER PROTEIN CLMP1 7 776 IPR044517 -
Vimu7g02019 782 CDD PB1 299 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02019 Vimu-Chr7 18109675 18114891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02019 51 175 Calmodulin-binding Proteins AT3G25230 28.676 1.25e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02019 K26538 - gmx:100786963 1282.7