Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02018 ATGAAGCTCGACAACTCCAACGGCCAGCCGCCCCTCGCTCCCGCCCTTCCGCCGCCGCAGGAGGACCCCACCGACGCCGAAGCCGATGAGATATTCGTCCCGCCCCTCAACTTCGCCATGGTCGACAACGGCATTTTTCGGTCTGGCTTTCCCAATTCTGCTAATTTCGGTTTCCTGAAATCGCTCCGTCTTCGTTCCGTAATGTCTGTTTCATTTTCTCTTCCTTCTTCTACGTCTCGTCGTCGAGTCCGGCTTTCAGAATTTCACGAAACGACGTCGGAATTTTTGAAGGACAACGGAATAAGACTTTATCAGTTCGGGATCGATGGCTGTAAGGTGCTTCTTTATTATTATGATAAAATTATTATTATTATTATTAACGGATGA 387 0.4858 MKLDNSNGQPPLAPALPPPQEDPTDAEADEIFVPPLNFAMVDNGIFRSGFPNSANFGFLKSLRLRSVMSVSFSLPSSTSRRRVRLSEFHETTSEFLKDNGIRLYQFGIDGCKVLLYYYDKIIIIIING 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02018 128 Pfam Tyrosine phosphatase family 33 110 IPR004861 -
Vimu7g02018 128 Gene3D Protein tyrosine phosphatase superfamily 31 124 IPR029021 -
Vimu7g02018 128 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 112 IPR029021 -
Vimu7g02018 128 MobiDBLite consensus disorder prediction 1 27 - -
Vimu7g02018 128 PANTHER TYROSINE-PROTEIN PHOSPHATASE 28 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02018 Vimu-Chr7 18106771 18107264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02018 15 112 Protein tyrosine phosphatase (PTP) family AT4G03960 44.898 2.29e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02018 K18045 - gmx:100785520 125.946