Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02014 ATGAACTTTGGCAGAGCTTCAATGGGAGGCTCATGTTTCCATGCGCTTCGTTTGAGGAGGTTCAAGAGCAAGCCTCTGCCAGAACCCTCTTCTTCTTCGAGGGCAAGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGACAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCATCAAAGGAGGATCAAGAAGAATGGACTGCTGACCTTTCCCAACTTTTCATAGGTAACAAGTTTGCTTCAGGTGCTCACAGTAGGATTTACCGTGGAATTTACAAGCAGAGAGCTGTTGCTGTAAAAATGGTGAGGATTCCCACACAGGACGAGGAGAGAAGAGGCTTGCTCGAACAGCAATTCAAGTCAGAAGTTGCTTTACTTTCACGTCTCTTTCACCCTAACATAGTGCAGGTCATTAAGCTCTTCAAACTCTACAGCACTCAAACTTTTATTGCAGCATGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAACCATACTCTCTTTCCACAGAAACCATACTACGGTTAGCTCTTGACATATCAAGGGGCATGGAGTACCTTCATTCGCAAGGTGTGATCCACAGAGACCTAAAGTCAAATAACTTGCTTCTCAACGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTCGAAACACGGTGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCCCCTGAGATGATTAAGGAAAAACCTTACACTCGTAAAGTTGATGTCTACAGCTTTGGAATTGTGCTCTGGGAGCTCACCACTGCTTTACTTCCATTCCAGGGAATGACCCCTGTTCAAGCTGCTTTTGCTGTTGCCGAAAAGAACGAAAGGCCTCCACTTCCTGCTAGTTGCCAACCAGCGCTTGCCCATCTGATAAAACGTTGTTGGTCAGCGAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGCACTTTGGAGAAGTACGATGAGTGCGTGAAGGAGGGTCTTCCTCTGACTCATCATTCAGGCCTTGTCAGCAAAAACATCATCATTGAACGCTTAAAAGGTTGCGTCTCTATGAGCTCTTCCATACCTGTACAGGCTTGA 1182 0.4569 MNFGRASMGGSCFHALRLRRFKSKPLPEPSSSSRARLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRGLLEQQFKSEVALLSRLFHPNIVQVIKLFKLYSTQTFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNIIIERLKGCVSMSSSIPVQA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02014 393 Pfam Protein tyrosine and serine/threonine kinase 86 349 IPR001245 GO:0004672|GO:0006468
Vimu7g02014 393 Gene3D Phosphorylase Kinase; domain 1 71 178 - -
Vimu7g02014 393 FunFam Serine/threonine-protein kinase isoform 1 74 178 - -
Vimu7g02014 393 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02014 393 SUPERFAMILY Protein kinase-like (PK-like) 62 350 IPR011009 -
Vimu7g02014 393 CDD STKc_MAP3K-like 91 347 - -
Vimu7g02014 393 FunFam serine/threonine-protein kinase HT1 179 372 - -
Vimu7g02014 393 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 352 - -
Vimu7g02014 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vimu7g02014 393 Gene3D Transferase(Phosphotransferase) domain 1 179 366 - -
Vimu7g02014 393 PRINTS Tyrosine kinase catalytic domain signature 174 187 IPR001245 GO:0004672|GO:0006468
Vimu7g02014 393 PRINTS Tyrosine kinase catalytic domain signature 212 230 IPR001245 GO:0004672|GO:0006468
Vimu7g02014 393 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672|GO:0006468
Vimu7g02014 393 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672|GO:0006468
Vimu7g02014 393 PRINTS Tyrosine kinase catalytic domain signature 258 268 IPR001245 GO:0004672|GO:0006468
Vimu7g02014 393 SMART serkin_6 84 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02014 Vimu-Chr7 18086101 18088165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02014 8 384 MAP Kinase Kinase Kinase AT1G62400 80.879 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu7g02014 PK_Tyr_Ser-Thr 1.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02014 - - gmx:100803225 733.791