Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02000 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCACCGATCATCACCGTCACTCGTCTAAACGCAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAGTCTGTGTGAGGATGCGGAAAGAGGAGGCTGTGAATTCATGGTCGAGCTCCTCCGGCGCTTCTGGCGCCGCCGGAAGCGGCTGCTCCGTGGCCGTGCAGAAGCCGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCAGCCGGAAACACTATTGTGATGCAGGCTTTCCCCGAAGACAGCGTGAAATCGATTCATGAGCGTATCCAAAGCATGAAGGGAATTCCCGTGTTTGAACAGAGATTAATTTATCGGGGGAAACAGCTTCAGTGGGAGCAGACTCTCGCTGAATGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGCATGCGCAGTACTGAACACCCTCAGGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTTTGTTGTGGTGAGACTGTTCACGATTCCTTGAAGACTATCAAGGGGTTAATCACCAGTTACTTGAACATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAACAAGGATTGTGCTGAGTCTTCTGTTAGACACTTTTTGAGTTCTTGCCGAAATACCTTGTCCAAGGCATTGCATGGGCAGTGTGCATGTGTGGTCTTAGAGTTCTGTAAATTGCTTAGGAGAGTTGGAAGTAATGACCCTTTGTATCTCTATTGCCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTAGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGTTAATTGCTTGTTGATGGACTTGGACTCGAGTATGGAATCCCACAGAGCCGTGGGGCCTTTGTCTAATGATGTTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAATGGTTCTATGGCTCAAGACAAAAGCAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTACATGCAGTTATTGAACAAAATCGACCAATGCCTTCAAAAAATGGACCAGAGCTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCTTTATCCTGGGTGGTCTCATTATCTATCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAATGTGGTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTTTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAGTCTTTTGAATACATAGCGCGTGCTGAGCCTGAATCTCTACATGCTGGTTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCACTTTTTGTGGCATGCCCAACTGACCGAAGGAGATTTTTCCCTAATCCCGGACTGAGGTGGCAGGAAGTTAGAGGAGAGAAATCGGGGAGGGGAATAGAGAGATTCTATTTGTATTTGGTTTTGCAGAGAGTTGAGGACAGGTTTTTGGTTGATAGAGGAGAGGAATTGCTTGTGTTGCTCTAG 1887 0.4579 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSDLVCVRMRKEEAVNSWSSSSGASGAAGSGCSVAVQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKDCAESSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGSNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELVNCLLMDLDSSMESHRAVGPLSNDVVDFTAFLVPLRTGIKEQQAVNGSMAQDKSNKDLLHAKEIEYLHCLYMQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPGWSHYLSILKELYQISKLYDGAEEKLWSVLRRHRNVVCLLIVRYAKRTDEHQWILEHRFVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPTDRRRFFPNPGLRWQEVRGEKSGRGIERFYLYLVLQRVEDRFLVDRGEELLVLL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02000 628 SUPERFAMILY Hect, E3 ligase catalytic domain 503 585 IPR035983 GO:0004842
Vimu7g02000 628 SMART ubq_7 78 150 IPR000626 GO:0005515
Vimu7g02000 628 ProSiteProfiles Ubiquitin domain profile. 78 154 IPR000626 GO:0005515
Vimu7g02000 628 MobiDBLite consensus disorder prediction 1 32 - -
Vimu7g02000 628 SUPERFAMILY Ubiquitin-like 64 153 IPR029071 -
Vimu7g02000 628 Gene3D - 71 167 - -
Vimu7g02000 628 Gene3D Hect, E3 ligase catalytic domains 466 605 - -
Vimu7g02000 628 ProSiteProfiles HECT domain profile. 528 584 IPR000569 GO:0004842
Vimu7g02000 628 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Vimu7g02000 628 PRINTS Ubiquitin signature 131 152 IPR019956 -
Vimu7g02000 628 PRINTS Ubiquitin signature 110 130 IPR019956 -
Vimu7g02000 628 PRINTS Ubiquitin signature 89 109 IPR019956 -
Vimu7g02000 628 MobiDBLite consensus disorder prediction 14 32 - -
Vimu7g02000 628 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 584 - -
Vimu7g02000 628 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 71 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02000 Vimu-Chr7 17999325 18001751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02000 78 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 5.33e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02000 - - vum:124833625 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02000 7 17999325 18001751 Vimu2g01180 2 7864760 7870283 PCT