Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01992 ATGCAAACGTCTCAGAAACACCCAACTTCGGCTGATGTACACTTCTATCACCACCAGCCTGTGCAAGGCATGTACCACGTTTTGCAGAGCGATCTATGCCATGATGCCCGTCATAGCAGCAGCCAGGGAACAAGCGTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTAGAATCATGCCCTGTACCAACTACTGGTTTCACGGAGTGTGCCGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCATTCATGCTATTCAGATCACCACCAATCCTCTGACAACACCTATGGATCGCCAATAAGCGGTTTGTCTAGCGTTGATGATGGGCATGAACTGAAGCACAAACTTAGACAACTGGAGATTTCATTGTTGGGGCCTGACGAATCCGACATTGAAGACAGTTTTGGCTGCTGCGTCAAGGGCAGCAGACCCGACGGAGCATCTCAGCTGGCTAAACATAACTGGGAAGAGATTGCTGAAAATATTTCACAATTTGACCTGAAAGGAGTCCTCAGGGTATGTGCGCAGGCCGTGTCTGATGAAGATGTTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTAAGAGCAAGGTTGGAATCATCAGGGCATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTGATGAGTTACATGCACATCCTGTACCAGATTTGCCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTAATTACAGAAGCTATGGCTAACGAGTCCAGGATTCATATAATGGATTTCCAAATAGCGCAGGGCACACAGTGGTATTTACTTATCAAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTGACCGGTGTTGATGATTCGCATTCGATTCAAGCTCGAGGTGGAGGAATTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAATTTCAGAGTGCTGCAATGTCTGGGTGTGAGGTTGTGCGAGGAAGTGTTGAAATTCGAGGCGGGGAAGCTCTGGCAGTAAATTTTCCTTATGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACTGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTGTCTCCGAAGGTTGTTACCCTTGTGGAGCAAGAATCGAACACGAACACATCTCCTTTCTTTTACAGGTTTCTTGAGACCTTGGATTACTACACTGCCATGTTTGAATCCATAGATGTGGCTTGCCCAAGAGATGATGAGAAGCGCGTGAGCGCAGAGCAGCACTGTGTGGCACGAGACATTGTGAACATGATAGCTTGTGAGGGGGCTGAGAGAGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGCGAATTGAGCTCTTCTGTCATCGTTGCTACCCAAAATCTCCTAAACGACTTCAGTCAAAATTATAGGCTTCAATATAAAGACGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCTGCTTGGAGAATGGAGAGAGAGGAAGAGAGGGAACGGCGTCGTTTGCGTGACCGACAGAGAAGGCAATCAATGACTAAAGAGCAGAGAGAACGACACCTTGCACGGCGGCGCAGAAACTACCAGCTTCGGCGGCAGAGAGCCGCAAATACTCCATTACTGTCTCTTCCTCAATCAACATCTTCTCAACCCTTCCTCACCACTGCCGTTCATCTTCCATCTCTTCCTCCTTCCACCCCCTCACAGCACACGTTACAGATTCTTCAAGATACAATGATGAATAATGGAGCGTCAATTCAGATGGAAGGTTTTCCCAAGCGATTAAGTATTGTGAAACGGCTTGCAAGAAACTTTGGAAATACAGAGAGTGTTATGACACTGGACAGTTATCATGTCGCACCAGATTTTATATCAGGTAACGGTGGCACGACAAACATCTTACGTTTGAATAGTGTGAAACGCCTTGCTCGATCATTAAGTTTTGCTTTGGAGAAACAGCCATCCTGA 2142 0.4655 MQTSQKHPTSADVHFYHHQPVQGMYHVLQSDLCHDARHSSSQGTSVSFESCKEQYFTLESCPVPTTGFTECADSPSYASVSSKRSPFSPQGSHSCYSDHHQSSDNTYGSPISGLSSVDDGHELKHKLRQLEISLLGPDESDIEDSFGCCVKGSRPDGASQLAKHNWEEIAENISQFDLKGVLRVCAQAVSDEDVPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPTSKELMSYMHILYQICPYWKFAYISANAVITEAMANESRIHIMDFQIAQGTQWYLLIKALAHRPGGPPSLRVTGVDDSHSIQARGGGIEIVGERLSEFARSCGVPFEFQSAAMSGCEVVRGSVEIRGGEALAVNFPYVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYTAMFESIDVACPRDDEKRVSAEQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCELSSSVIVATQNLLNDFSQNYRLQYKDDALYLGWMNRHMATSSAWRMEREEERERRRLRDRQRRQSMTKEQRERHLARRRRNYQLRRQRAANTPLLSLPQSTSSQPFLTTAVHLPSLPPSTPSQHTLQILQDTMMNNGASIQMEGFPKRLSIVKRLARNFGNTESVMTLDSYHVAPDFISGNGGTTNILRLNSVKRLARSLSFALEKQPS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01992 713 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 133 539 IPR005202 -
Vimu7g01992 713 MobiDBLite consensus disorder prediction 590 605 - -
Vimu7g01992 713 Pfam GRAS domain family 181 549 IPR005202 -
Vimu7g01992 713 MobiDBLite consensus disorder prediction 546 576 - -
Vimu7g01992 713 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Vimu7g01992 713 MobiDBLite consensus disorder prediction 79 115 - -
Vimu7g01992 713 MobiDBLite consensus disorder prediction 546 605 - -
Vimu7g01992 713 MobiDBLite consensus disorder prediction 79 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01992 Vimu-Chr7 17918358 17923759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01992 1 549 GRAS Transcription Factor Family AT4G17230 57.455 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu7g01992 GRAS 1.6e-119 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01992 - - gmx:100792931 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01992 7 17918358 17923759 Vimu2g01191 2 7974903 7976564 PCT