Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01978 ATGGGCACTCACGAAGTGACTGGGGCCAGTCTATACGTCGACAAGTGGGAATGGTCGGCTAGAAAAGAAAGAAATGCCGCGGTGGTGATGCTGTTGCTCCGCCCTCCAAGCTCGTCGGAGAATTTTCTTTTTCTTCTTCTTGAAGTTTGCAGCTTTTTCCCTTTCATTGGCCATTCTTCCTCTGAGTTGAGAATGGGTAATGTGAACGTGCGTGGTTCTGAAGAAGAAGCAGAAGAAGCTTCTGCTGATGGGAACGCCTTGCCTCACTCTCCTCCCACTATCTCTCCCTTCGTATTCACTCCTCAGCTTCCTGAGGTTCCGCTACAAACACCTGAGGAGATGCATGTACCCAGTTATTCCTCGGTGGAGATAACTTCAGGGTATGAAGATATGTTCAGTGAACTGGGAATTCCAACTATGATTACTTGGAGTTATGGTGGAAAGGAAGTTTCTGCGGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCCCTGCAGAGATCAGGGAAAGACTTTGCAATAATGAAGGTATTGCCATCTGGGGTTTACCAGTACAGATTTATTGTGGATGGACTGAGGAGGTATACTCCAGACTCGCCTTGGGCCCGTGATGATGCCGGGGATGCTTACAACATCTTGGACTTACAGGATTATGTTCCTGAAGATATTGGAAGCATTTCCAGTTTTGAGCCTCCTCAATCACCAGAGTCGAGCTATGATAACTTACAGCTTAGTTCCGAAGATTATGCTAAGGAGCCACCGTTGGTTCCTCCACTCTTGCAAATGACACTGCTCAATGTGCCTGGAACAAATATGGAAATCCAACCTCCTTTGTCAAGACCTCAACATGGAGTTCTGAATCATCTTTACACGCAGAAAGGAAAGAGCAGTCCTGCAGTTGTTGGTCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCGTTGTAA 969 0.4654 MGTHEVTGASLYVDKWEWSARKERNAAVVMLLLRPPSSSENFLFLLLEVCSFFPFIGHSSSELRMGNVNVRGSEEEAEEASADGNALPHSPPTISPFVFTPQLPEVPLQTPEEMHVPSYSSVEITSGYEDMFSELGIPTMITWSYGGKEVSAEGSWDNWKTRMPLQRSGKDFAIMKVLPSGVYQYRFIVDGLRRYTPDSPWARDDAGDAYNILDLQDYVPEDIGSISSFEPPQSPESSYDNLQLSSEDYAKEPPLVPPLLQMTLLNVPGTNMEIQPPLSRPQHGVLNHLYTQKGKSSPAVVGLGTTHRFLAKYVTVVLYKSL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01978 322 CDD E_set_AMPKbeta_like_N 138 214 - -
Vimu7g01978 322 Gene3D Immunoglobulins 133 219 IPR013783 -
Vimu7g01978 322 SUPERFAMILY AMPKBI-like 219 321 IPR037256 -
Vimu7g01978 322 Pfam Glycogen recognition site of AMP-activated protein kinase 137 216 IPR032640 -
Vimu7g01978 322 SMART AMPKBI_2 232 322 IPR006828 GO:0005515
Vimu7g01978 322 Gene3D - 225 322 - -
Vimu7g01978 322 SUPERFAMILY E set domains 137 222 IPR014756 -
Vimu7g01978 322 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 250 320 IPR006828 GO:0005515
Vimu7g01978 322 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 69 322 IPR043554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01978 Vimu-Chr7 17831648 17836956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01978 K07199 - gmx:100805688 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01978 7 17831648 17836956 Vimu2g01210 2 8096316 8099144 PCT