Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu7g01974 | ATGCATGACAACAACAACAGCAACCACACAGCAGATGAGACCAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATCGCAAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCACATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCAATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTCGAGGGTGACCGAACCTCCATGAGAGGTGAACCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTCCCGCTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGGTCCTGCCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCACCACCATGGAATGCCTAGCACTGAACCGAATTCTCGCTCCATGTGA | 552 | 0.5072 | MHDNNNSNHTADETNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGEPLGKRTIEYAPMGVGVPAAFVPPPFHPNGYYGPAMGTYVAPPNPASSHHHGMPSTEPNSRSM | 183 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu7g01974 | 183 | Gene3D | Histone, subunit A | 12 | 129 | IPR009072 | GO:0046982 | |
Vimu7g01974 | 183 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 4 | 153 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Vimu7g01974 | 183 | FunFam | Nuclear transcription factor Y subunit B-6 | 14 | 130 | - | - | |
Vimu7g01974 | 183 | MobiDBLite | consensus disorder prediction | 163 | 183 | - | - | |
Vimu7g01974 | 183 | SUPERFAMILY | Histone-fold | 22 | 120 | IPR009072 | GO:0046982 | |
Vimu7g01974 | 183 | MobiDBLite | consensus disorder prediction | 169 | 183 | - | - | |
Vimu7g01974 | 183 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 25 | 89 | IPR003958 | - | |
Vimu7g01974 | 183 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 56 | 72 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Vimu7g01974 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 72 | 90 | - | - | |
Vimu7g01974 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 53 | 71 | - | - | |
Vimu7g01974 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 91 | 109 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu7g01974 | Vimu-Chr7 | 17813221 | 17815043 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu7g01974 | 16 | 115 | CCAAT-HAP3 Transcription Factor Family | AT5G47670 | 94.000 | 9.54e-68 | 204 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Vimu7g01974 | CBFD_NFYB_HMF | 4.2e-26 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu7g01974 | K08065 | - | gmx:100194424 | 294.278 |