Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01974 ATGCATGACAACAACAACAGCAACCACACAGCAGATGAGACCAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATCGCAAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCACATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCAATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTCGAGGGTGACCGAACCTCCATGAGAGGTGAACCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTCCCGCTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGGTCCTGCCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCACCACCATGGAATGCCTAGCACTGAACCGAATTCTCGCTCCATGTGA 552 0.5072 MHDNNNSNHTADETNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGEPLGKRTIEYAPMGVGVPAAFVPPPFHPNGYYGPAMGTYVAPPNPASSHHHGMPSTEPNSRSM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01974 183 Gene3D Histone, subunit A 12 129 IPR009072 GO:0046982
Vimu7g01974 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu7g01974 183 FunFam Nuclear transcription factor Y subunit B-6 14 130 - -
Vimu7g01974 183 MobiDBLite consensus disorder prediction 163 183 - -
Vimu7g01974 183 SUPERFAMILY Histone-fold 22 120 IPR009072 GO:0046982
Vimu7g01974 183 MobiDBLite consensus disorder prediction 169 183 - -
Vimu7g01974 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Vimu7g01974 183 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu7g01974 183 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Vimu7g01974 183 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Vimu7g01974 183 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01974 Vimu-Chr7 17813221 17815043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01974 16 115 CCAAT-HAP3 Transcription Factor Family AT5G47670 94.000 9.54e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu7g01974 CBFD_NFYB_HMF 4.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01974 K08065 - gmx:100194424 294.278