Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01944 ATGTGGATTGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGACGTGTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAAAAAGCCATTGGAGCGAGGGAAGTATATTGTGAAAGAGGTTAAGAATGCAGTGGATAAGACAAAAGGCTTATACGGTCTGCAAGAATTTATTGATCCAGCCATGGGATTGTCGTCCACAACACTGATCGGTTTTGACAAGTTTGTGAATTTGACCTTGAAATGTGTTGAAGAGTCAGGTGAAGCAAGGCCTAAAATGAGTGATGTGGTAAGAGAAATTGAGAACATATTGAAGTCAGCTGGTGCAAACCCTACTGAGGAATCACCCTCCATCTCTTCTAGCTATGAAGAGGTAAGCAGAGGGAGTTCCAGCCATCCTTATAATAGCAACGACACCTTTGATTTGAGTGGAGAGTCTCCATATCCAAAAGTTGACCCTAGCTAA 489 0.4172 MWIGYLDPEYYMSQQLTEKSDVYSFGVLMLELISAKKPLERGKYIVKEVKNAVDKTKGLYGLQEFIDPAMGLSSTTLIGFDKFVNLTLKCVEESGEARPKMSDVVREIENILKSAGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSGESPYPKVDPS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01944 162 MobiDBLite consensus disorder prediction 116 151 - -
Vimu7g01944 162 Pfam Protein tyrosine and serine/threonine kinase 4 107 IPR001245 GO:0004672|GO:0006468
Vimu7g01944 162 MobiDBLite consensus disorder prediction 113 162 - -
Vimu7g01944 162 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 131 - -
Vimu7g01944 162 SUPERFAMILY Protein kinase-like (PK-like) 3 147 IPR011009 -
Vimu7g01944 162 Gene3D Transferase(Phosphotransferase) domain 1 2 135 - -
Vimu7g01944 162 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01944 Vimu-Chr7 17601405 17607250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01944 3 161 Receptor kinase-like Gene Family AT5G49760 52.830 1.76e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu7g01944 PK_Tyr_Ser-Thr 2.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01944 - - pvu:PHAVU_003G0900001 278.87