Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01941 ATGCCCGCCTTGGCGGCTATTGGGGAGAAGGAGTGGTATTTCTATGTGCCGAGAGATAGAAAGTATCGAAACGGTGATCGTCCCAATCGTGTCACCACCTCTGGGTATTGGAAGGCGACGGGAGCTGATAGGATGATCAGAACGGAGAATTTTCGGTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGCTTGCCGCAACACGAAACCGAAAGATATCAAAAGGTACCACATACCTCACACCTTATACGTTTTGTATTTGCAATAATCGATCCACTTGCTGTTTCTACTTCTTCTTTCGTGATATGTGTAGGAAAACCCGCCGGGTCTTAG 384 0.4635 MPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKVPHTSHLIRFVFAIIDPLAVSTSSFVICVGKPAGS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01941 127 Pfam No apical meristem (NAM) protein 6 82 IPR003441 GO:0003677|GO:0006355
Vimu7g01941 127 ProSiteProfiles NAC domain profile. 1 106 IPR003441 GO:0003677|GO:0006355
Vimu7g01941 127 SUPERFAMILY NAC domain 2 93 IPR036093 GO:0003677|GO:0006355
Vimu7g01941 127 Gene3D NAC domain 1 121 IPR036093 GO:0003677|GO:0006355
Vimu7g01941 127 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01941 Vimu-Chr7 17568078 17570254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01941 1 93 NAC Transcription Factor Family AT2G02450 89.247 8.56e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g01941 NAM 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01941 - - gmx:100792622 196.052