Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01938 ATGCAAGAGAAGGACTGGCTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTTTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGTGGAAAGTCCCGTCAGTCTGAATCTCAAGCCAAGGGGATGAAGATGTCTGCACCACCTAAAGAGGAGGATGATAGTGGAGAGGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGTGCTTGCGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCCGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCTAGCTGCAGTAACAAGAGGGTTAGAGTTTGA 387 0.4522 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNESGKSRQSESQAKGMKMSAPPKEEDDSGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01938 128 CDD PHD_AL_plant 75 124 IPR044104 -
Vimu7g01938 128 FunFam PHD finger alfin-like protein 67 123 - -
Vimu7g01938 128 PANTHER CPG BINDING PROTEIN 1 35 IPR045104 GO:0006355|GO:0042393
Vimu7g01938 128 SUPERFAMILY FYVE/PHD zinc finger 63 125 IPR011011 -
Vimu7g01938 128 ProSitePatterns Zinc finger PHD-type signature. 75 121 IPR019786 -
Vimu7g01938 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 123 IPR013083 -
Vimu7g01938 128 SMART PHD_3 74 122 IPR001965 -
Vimu7g01938 128 MobiDBLite consensus disorder prediction 58 73 - -
Vimu7g01938 128 Pfam PHD-finger 75 124 IPR019787 -
Vimu7g01938 128 ProSiteProfiles Zinc finger PHD-type profile. 72 124 IPR019787 -
Vimu7g01938 128 Pfam Alfin 1 33 IPR021998 GO:0006355|GO:0042393
Vimu7g01938 128 MobiDBLite consensus disorder prediction 30 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01938 Vimu-Chr7 17548010 17553768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01938 1 125 Alfin-like Transcription Factor Family AT1G14510 58.182 1.06e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu7g01938 PHD 4.2e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01938 K26274 - gmx:100807826 241.121