Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01937 ATGTCAGAAATGCGGGTGTCTGAGCTTCACTTGAAAAAGGAACTCACCCAAATACGCAAGGCTGCTCGAGTTCTCAGAGATCCTGGCACCACATCTTCCTGGAAGTCACCGCTCAGTTCATCAAGATCCGTGGCTGCATGGAACAGAGACAGTGGAAGTAGAAGGTTCAGCACCAACTCTCAACTTGCCAACAATGACAAAGAGAAAGAGAAGGAGAGGGAGAAAAAGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAACGAGGAAGAAGATGACGATGATGGTGATGATGGGGGGTCTTCGTCGCTTCTTGGGGACAGAGACAGAGACAGTTTAAGTGATGCTCGCAATGGTTGCGACTCTAAGAGTGATACATACCTGGCTGCTGGTGGTACCGGTGGCGGTGGTGGGACTCGTTCTTCTATTTTCAGATGTGGGGATGCTAATCTTGTTTCGAGAAGAACTGTCCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCTCATTTTGATTTTTTAGCAAAATATCAACAGCATAGACAAACGAATCCAGGGAGAAATTTTGTGAGTTCTTCGAAGGCAATGCTCGAGGGGCATTCTTCTTTGCCATTTTTTAGCAGAGATGACTCTGTTGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCGATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCGAAGTTTTTGAGAAGAAGTCGAAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATCGGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACTTCTGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGCTATTCTCCCTCACTGTCCGACACTTTGAGGAGGAAAGGGAGTAGTATGCTCTGTGGAAGTCAAACTATTTATCCCAGACACCGCAGATCGGTTTCGGCATCTCAAAAGAGAAGACTTTCTCAGAGGAGTGCTCGAGGTGTCATTCCATTACTCACAAACAGTGGTGATGCCAGAGAAGGGTCGTCTGTGGGAACCGGAAGGAGTGATGATGAACTTTCCACGAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGCTTGGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAAGAGGAGGGCACGCCGGAGAATAGTCGCTGTTTCAGCCAAAAGTATAGGCCGATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTTGTTCAGTCACTTATCAATGCTGTTTCCAGGGGACGCATTGCTCCTGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACGTCAACCGCTAAGATATTTGCTGCTGCCTTGAACTGTGCAAGTCCTGATGAGAATAAACCTTGTGGCTACTGCAGGGAATGCACTAATCTCATTTCTGGTAAGAGCAGTGATCTTTTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTTAAAAGATTGTCAACTGAGTCATCGTCAGCCTCACAAAAATATACAGTTTTGGTTATTGATGAGTGTCACTTGTTACCCTCAAAGACGTGGCTGGGATTTCTCAAGTTCCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTACCACGGACAATACAATCTCGTTGCCAAAAGTACCTTTTTAATAAAATTAAAGATGTGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGATCGCTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGAGTTTGTTGCGACTATTATTTTTTTGCATATTCATGTTTTCAAACACCTAA 2151 0.4472 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRFSTNSQLANNDKEKEKEREKKVFLYNWKNYKSSSEKYNEEEDDDDGDDGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAGGTGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNNPHFDFLAKYQQHRQTNPGRNFVSSSKAMLEGHSSLPFFSRDDSVEFSDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASQKRRLSQRSARGVIPLLTNSGDAREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEEEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNCASPDENKPCGYCRECTNLISGKSSDLLEVDGTNKRGIDKARYLLKRLSTESSSASQKYTVLVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDVDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVSLLRLLFFCIFMFSNT 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01937 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 685 IPR027417 -
Vimu7g01937 716 MobiDBLite consensus disorder prediction 25 73 - -
Vimu7g01937 716 MobiDBLite consensus disorder prediction 370 415 - -
Vimu7g01937 716 MobiDBLite consensus disorder prediction 106 123 - -
Vimu7g01937 716 MobiDBLite consensus disorder prediction 88 148 - -
Vimu7g01937 716 MobiDBLite consensus disorder prediction 396 413 - -
Vimu7g01937 716 Pfam DNA polymerase III, delta subunit 478 638 - -
Vimu7g01937 716 Gene3D - 640 701 - -
Vimu7g01937 716 Gene3D - 455 636 IPR027417 -
Vimu7g01937 716 FunFam DNA polymerase III subunit gamma/tau 459 637 - -
Vimu7g01937 716 CDD HLD_clamp_pol_III_gamma_tau 638 699 IPR045085 -
Vimu7g01937 716 NCBIfam DNA polymerase III subunit gamma/tau 463 703 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vimu7g01937 716 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 466 704 - -
Vimu7g01937 716 FunFam DNA polymerase III subunit gamma/tau 639 701 - -
Vimu7g01937 716 MobiDBLite consensus disorder prediction 29 63 - -
Vimu7g01937 716 CDD AAA 477 635 - -
Vimu7g01937 716 SMART AAA_5 495 645 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01937 Vimu-Chr7 17541162 17543312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01937 459 697 Core DNA Replication Machinery Family AT1G21690 24.498 2.70e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01937 - - gmx:100814391 1135.55