Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01921 ATGAAGGCATGGGGTTTAGATGCTGCATTCACTGCCGACGACGAAGATGAAGACAGCAGTGAAAGCAGAGCTATTGAAAAAATGAAGAAATGGATTATGTCACATCGAGTAGCCATTCTCAAATATCTCTCTGTAAATCCTTTGGGGGGATCGATAATGACCACCTCAGCGGCTATAGAACAATTTGACAAATGCATGAATGGGCAAATAGAAGTAATTTCACGGGTTTGGCATTTATTTCAAGCCTACAAAAAGGACAAAATTCCTTTCAAAATAGATGAGGGTCTGTATTTGGGTTCGATTGGCACTGCAGTTAACAAGGCTTCTTTGAAAGACCATAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTGATGATTTTGTCTATAAAATTATACATGTTGTTGACAAAGAAGATGAAGACTTAAAAAAATACTTCAATGAGTGTTTTGATTTTATTGATGAGGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGGAGTGTGACTATGGTTGTTGCGTATCTGATGGGGACTCGTGGAATGAGCCTTTCTGAAGCTCTGCAACATGTAAGGAGTATACGACCAGAAGCACGTCCCAATCAGGGTTTTATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTGAGTCACTTTAG 705 0.4071 MKAWGLDAAFTADDEDEDSSESRAIEKMKKWIMSHRVAILKYLSVNPLGGSIMTTSAAIEQFDKCMNGQIEVISRVWHLFQAYKKDKIPFKIDEGLYLGSIGTAVNKASLKDHNITHILTVAGRIPPAHPDDFVYKIIHVVDKEDEDLKKYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTMVVAYLMGTRGMSLSEALQHVRSIRPEARPNQGFICQLEDFEKSLQGASESL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01921 234 ProSiteProfiles Dual specificity protein phosphatase domain profile. 88 229 IPR020422 GO:0006470|GO:0008138
Vimu7g01921 234 Pfam Dual specificity phosphatase, catalytic domain 96 225 IPR000340 GO:0008138|GO:0016311
Vimu7g01921 234 Gene3D Protein tyrosine phosphatase superfamily 90 233 IPR029021 -
Vimu7g01921 234 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 150 208 IPR000387 GO:0016311|GO:0016791
Vimu7g01921 234 SMART dsp_5 88 226 IPR020422 GO:0006470|GO:0008138
Vimu7g01921 234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 230 IPR029021 -
Vimu7g01921 234 FunFam Dual specificity phosphatase 12 90 233 - -
Vimu7g01921 234 CDD DSP 89 222 - -
Vimu7g01921 234 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 76 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01921 Vimu-Chr7 17439746 17444062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01921 91 229 Protein tyrosine phosphatase (PTP) family AT3G06110 59.712 3.36e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01921 - - gmx:100306342 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01921 7 17439746 17444062 Vimu7g01921 7 17439746 17444062 ECH