Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01919 CTGACTCACACCCATTATTTCCGTCTTCCTTTGTTCCCAGAACAGCAGCACCACTTCTTGCTTCTGAATTTTAAGATGGGAGTTTCATGGAGTAACAATAACAGAAGAAGAAGAAGAAGAAGCACCTACTTTCATCCTCACCCTCATCCTCCACATCTCCCACCCCCTTATTATTATCCTCCGCCGCTTCTGCCACCACCAGCACCGCCTCCACAAGGTTACTTTATCACCTCATCCAACCCTTCTGCTTCTACCTCTACCACCACCGGCTATCTGGGTCCTCCTCCTCAGTATTACCCAAATGTCTACACTGCCAATTCTGTGATGCTTCATCAGCAGCCCTTGTATGCAAATGAGGGGGGAAACGAAATTCACGTTTCGCCACCACCCTATGTCGATCATCAAACCACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACGCTGCACCTCTGCGTAGATCCTAACAATCCAGATCACCACTTGATTTCTTTTGATTTCGATGCCCTCTTTGATGGCAGCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAATTGTAGGTTTAATCCACTGTTTCCTGATTTGTTTGAGCCCATCACATTTCCCTTTCAAAAAGGGGCAGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGCTTTTTTGAGTTGGATGATCTTTTTCGATCCTCACCCGGAGAAGATGTATTTCCCCTTGTCATATGTGCTGAAACTAATAGTATTTCTGTGCTGGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAACAATGGTGTTGGTCCTTTCCAAGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAGCAACAGCAGATTTTGATGATAATGATAGCGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTGCCCTGCCGACATATGTGCATGTGCAGTGAGTGTGCTAAAACTTTACGGTTTCAATCAAATAAGTGTCCTATATGCCGTCAACCTATTGAGGAACTTATAGAGATCAGGATAAACGTTGGCAATCAATGA 1125 0.4356 MTHTHYFRLPLFPEQQHHFLLLNFKMGVSWSNNNRRRRRRSTYFHPHPHPPHLPPPYYYPPPLLPPPAPPPQGYFITSSNPSASTSTTTGYLGPPPQYYPNVYTANSVMLHQQPLYANEGGNEIHVSPPPYVDHQTTKKIRNDVNLHKHTLHLCVDPNNPDHHLISFDFDALFDGSITIFYLAKEEENCRFNPLFPDLFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLFRSSPGEDVFPLVICAETNSISVLDASPHMQITQAVLEKNNGVGPFQVKVVRQILWIDDVRYELRELYGIGSSATADFDDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKTLRFQSNKCPICRQPIEELIEIRINVGNQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01919 374 SMART ring_2 319 357 IPR001841 -
Vimu7g01919 374 FunFam probable E3 ubiquitin-protein ligase LOG2 303 368 - -
Vimu7g01919 374 CDD mRING-HC-C3HC5_MGRN1-like 317 358 IPR045195 -
Vimu7g01919 374 ProSiteProfiles Zinc finger RING-type profile. 319 358 IPR001841 -
Vimu7g01919 374 PANTHER MAHOGUNIN 72 368 IPR045194 GO:0061630
Vimu7g01919 374 SUPERFAMILY RING/U-box 318 364 - -
Vimu7g01919 374 Pfam Zinc finger, C3HC4 type (RING finger) 317 363 - -
Vimu7g01919 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 368 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01919 Vimu-Chr7 17414496 17416619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01919 131 374 C3H Transcription Factor Family AT3G06140 64.000 2.51e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01919 - - gmx:102665712 532.717