Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01911 ATGGCACAACAGGTATTACTGAGCTCATGTTCACCTCAATATGTATCGCTTCGGCGGGTCAGAATTTCGAAGCCATCGATATGGGTCACGAAACCGACTACCGTTTCTTCACCATCATTTTCTACCTCAGCTCCTCTTCGCCACGCATTGTTTCGCTGCAGCTCTAGCGCTACCTCTTCTGTCGAACCCGATTTATCCTCTTCAGCAAAAATATTCGTCAAAGATTTCATGCAACTAAAAGGAACATACATAGTAGTTGTACAAGTATCTAATTTGAAATTCCCTGGCATAATTGTGCAGACTATTATTTGGAAACATTTGCTTCTGATACTGGGAAATGTCTCGTCTAAAGTGTCATTGCCGCCAAAACTGAAGTTTTCATGGTGGGCCATTGCAGGGCTACCTCACTCAACCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGTGTAGTTAATCTCGTCCAGCTTCCAATAGATGAAAAATCAGGAAAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCGCAATTGGCTGTCCAAGAGATGAATGGAAAGAGCCTTTCTATAACCCAAAAATATACTTGGAAAGTTGCTGATCAAGAACAAGAAGCAGTTCAAGCCACCAATGGATGGGGTCCAGGGTTTTACCTTCTATCTTCCAGTACCTCCTTTGATCACTGTCATGACCACATTCAAGGCTGCAAATGA 726 0.4215 MAQQVLLSSCSPQYVSLRRVRISKPSIWVTKPTTVSSPSFSTSAPLRHALFRCSSSATSSVEPDLSSSAKIFVKDFMQLKGTYIVVVQVSNLKFPGIIVQTIIWKHLLLILGNVSSKVSLPPKLKFSWWAIAGLPHSTSEGRLMKVFSEFGVVNLVQLPIDEKSGKSLGFAFIWFVKEESAQLAVQEMNGKSLSITQKYTWKVADQEQEAVQATNGWGPGFYLLSSSTSFDHCHDHIQGCK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01911 241 SUPERFAMILY RNA-binding domain, RBD 131 193 IPR035979 GO:0003676
Vimu7g01911 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 208 IPR000504 GO:0003723
Vimu7g01911 241 SMART rrm1_1 131 204 IPR000504 GO:0003723
Vimu7g01911 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 193 IPR000504 GO:0003723
Vimu7g01911 241 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 128 194 - -
Vimu7g01911 241 Gene3D - 130 216 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01911 131 190 Eukaryotic Initiation Factors Gene Family AT3G11400 43.333 5.60e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01911 - - gmx:100791917 100.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01911 7 17336376 17339031 Vimu7g01911 7 17336376 17339031 ECH