Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01899 ATGGTGAGGGTTAGTGTATTGAACGATGCTCTCAAGAGCATGTATAATGCCGAGAAAAGGGGGAAGCGCCAAGTCATGATTAGGCCATCCTCCAAAGTTATTATTAAATTCCTTTTGGTGATGCAAAAGCACGGATACATCGGAGAGTTTGAGTATGTTGATGACCATAGGGCTGGTAAAATCGTGGTTGAGTTGAACGGTAGATTGAACAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTGGGCGTCAAAGAGATAGAACCTTGGACTGCTAGGCTTCTCCCTTCAAGACAGTTTGGGTATATTGTATTGACAACCTCTGCTGGCATTATGGATCATGAAGAGGCCAGGAGGAAAAATGTTGGTGGTTATTTTCAATTGAGGATGGAAGTGATTTCAGTTTTGAGATTCACCGGTTGCAATGGAGGATATGCTAGTCACTAG 444 0.4324 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGYFQLRMEVISVLRFTGCNGGYASH 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01899 147 Gene3D - 70 126 - -
Vimu7g01899 147 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 124 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu7g01899 147 FunFam 40S ribosomal protein S15a 1 69 - -
Vimu7g01899 147 FunFam 40S ribosomal protein S15a 70 125 - -
Vimu7g01899 147 Pfam Ribosomal protein S8 7 124 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu7g01899 147 SUPERFAMILY Ribosomal protein S8 4 123 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vimu7g01899 147 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu7g01899 147 Gene3D - 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01899 Vimu-Chr7 17256101 17257193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01899 1 123 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.748 2.54e-86 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01899 K02957 - mus:103999910 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01899 7 17256101 17257193 Vimu2g01029 2 6628396 6629519 PCT