Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01898 ATGCAGTCATCTGTAGATGTAGACTTCTTTACAGAATATGGCGAAGGGAATAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCTTATGATACACACACAGGAGAGAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACACGTTTCTGATGCCACCCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTATTACCTCCTTCTAGAAGGGAGTTCAAAGATATATATGTTGTATTTGAACTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTGCAGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTAAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTGAAGCCGAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCTACACGGTGGTATAGGGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACTGGGAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCCTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGAAGATACTTGAGTAGTATGCGCAAGAAGAAGCCAGTTCCTTTCTCTCAAAAGTTTCCCAATGTAGATCCCCTTGCTCTTCGGGTTTTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCAAAAGTTGAGAGAGAGCCTTGTTCTCAGCCAGTTACCAAGATGGAGTTTGAATTTGAGAGACGTAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCAAAGATGTTAAAAGAACATCTAGACGGGGAAGAGCCAACAGGATTCATGTATCCAAGGTGCTTGGAGGATTTCTTCTTCTCCACTTCTGCATTTGCCCCTTCGTCTATTGACTTCCGTGTTTACCATAAGATAGAATTTGATTTTGTGAGCCATAAAACTTCTTCTGGTGAAGAATATACTTTTCCCTCCTCCACCCAAATTATGCTTATGTTGTTCTGCTCTAGATCCCCAACCGTCATAAACACTTCCTTTGGATACCTACTTTTAATGTTAATGAATATTGCCGTGGACCATTTCAAAAAACAATTTGCATATCTTGAAGAGCATTATGGAAAAGGTGGAACCGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGGCCATGTGTGTTGTATTCAGATAACGAAAGGCAAAATATGGCAGTGGTTGCGGATGATCTCTCCAAGTGTAGCATCAAAGAAGTTGAGAAGCCAGCGATAGACAAGACCGGTGGTATCCCAATGACCAGGCTTCCTTTATCAGCTCCTCAAAATATTAAAGGTGTGATGACTAATTGTAGTTTGTATTTTGCTTTTTCATTTCCCTCTTTCTTTCCTGATCTCATATATGTGCAAAGGCAGACATTGTATTCAAATAGTGTGTGCTCGTTGTTGAGGCTTTTTTCTTTTTATTCATTGGCTTTTTACATACCCAATAAGAAGTATGTTTCTGGTTGTGTGAACTTGTTCTTGCTTCTGTCACATGATGGGGGAGTTATCTGTGAATGGCCGAAAGCAGTAGGACTTGTATTACTGAAATACATTTGTGTTGCAGCACGTCCAGGAAAAGTTGTAGGTTCAGTACTGCATTACAACAACAGTAGGGTGGCCGAGACTGAGCAGCGGAAGACGGGTAAAAACCCATCTGTTTCAGCCAAGTATGCTGCTCAAAGCTGTTCATACCCAAGAAGAAACCCAAACTGTAAAATTGAGAGGGCAGTTGAAGGAATTGAAGGTGCTAATGGACTTCAGACAAAGCCTCAATATCTTGCACGCAAAGTTGCTGCTGCTCAAGGGGGACCTGGTGGTAGTTGGTATTGA 2148 0.4115 MQSSVDVDFFTEYGEGNRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTAEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPCSQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLDGEEPTGFMYPRCLEDFFFSTSAFAPSSIDFRVYHKIEFDFVSHKTSSGEEYTFPSSTQIMLMLFCSRSPTVINTSFGYLLLMLMNIAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRPCVLYSDNERQNMAVVADDLSKCSIKEVEKPAIDKTGGIPMTRLPLSAPQNIKGVMTNCSLYFAFSFPSFFPDLIYVQRQTLYSNSVCSLLRLFSFYSLAFYIPNKKYVSGCVNLFLLLSHDGGVICEWPKAVGLVLLKYICVAARPGKVVGSVLHYNNSRVAETEQRKTGKNPSVSAKYAAQSCSYPRRNPNCKIERAVEGIEGANGLQTKPQYLARKVAAAQGGPGGSWY 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01898 715 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 334 - -
Vimu7g01898 715 FunFam Mitogen-activated protein kinase 105 333 - -
Vimu7g01898 715 SUPERFAMILY Protein kinase-like (PK-like) 15 314 IPR011009 -
Vimu7g01898 715 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu7g01898 715 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Vimu7g01898 715 SMART serkin_6 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01898 715 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
Vimu7g01898 715 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01898 715 CDD STKc_TDY_MAPK 18 355 - -
Vimu7g01898 715 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Vimu7g01898 715 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01898 715 FunFam Mitogen-activated protein kinase 9 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01898 Vimu-Chr7 17246184 17249632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01898 625 715 MAP Kinase Gene Family AT5G19010 38.614 2.78e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu7g01898 Pkinase 7.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01898 - - gmx:100799442 731.865