Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01882 ATGGGTTGTGTCCATGGCAAGTGTTGCTGTGGTGAGCATACTTCATCAGAGGATGGTTCTACGGATTACCGAGAAACCGGCTTCGTTCGTAGCCACAGGAAAAACATACTCGCACAGAGATCACTGAAGCGTGCTCCTGTTCCTTCTCACAACTTCATTTTGGAATACACTTTTTTCACTCAGCGAGGGTACTACCCCGACTCACCTGATAAAGAAAACCAAGATAGTTTTTGCATTAGTACAAATCTCCAAGGTAACCCCAATGTTCATTTCTTTGGCGTCTATGATGGGCATGGTCAATTAGGTAGCCAGTGTTCAAATTTCGTTAAGGATAGGCTGGTAGAGAAGTTGGTAAATGACCCTGCGTTATTGGAGGATCCTGTCCAAGCTTACAATTCTGCATTTTTGGCAACGAACCAAGAATTACGTAGTAGTAGTGAGATTGATGATTCTATGAGTGGCACCACCGCGATAACGGTGCTTGTTATCGGTGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCGGTGCTGGCTGTTAAGGATGGGAACCGCATTGTCGCGGAGGACTTGTCCTCTGATCAGACGCCGTTTCGGAAAGATGAATATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCTCAAGGATCCAGATATCCAGAGTTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCTCCCAGATTGTGGGTTCCAAATGGGATGTATCCTGGAACTGCTTTTACGAGGAGTATAGGGGATAGTTTAGCAGAGACAATTGGTGTCACTGCTCTTCCTGAGGTGAAAACTTTTCAGCTTACACCTGATCATCTTTTCTTTGTGGTGGCAAGTGATGGCATATTTGAATTCCTGACAAGTCAAACTGTTATTGATATGGCAGCAAGCTATATGGATCCTCGTGATGCATGTGCGGCTATTGCAGAAAAGTCATATAAACTATGGTTAGAACTTGAGAACAGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGTACATTTAGAGTTGGATCAGATGACATAAATGTTGGCGCTGTACTGAATTCCGGGACAGGAACTCCTGAGATACCCGCTGCGCATGAATCTGATGTTCATCGTTCTGTTAGAACCAGTTTCTCAGAGTTGCACTCTGATCAGCCTGAGGCTTCAGTGATGGGCCCAGTTCACTCTGCAGAATGTACAAGACCAATTGAATGA 1245 0.4482 MGCVHGKCCCGEHTSSEDGSTDYRETGFVRSHRKNILAQRSLKRAPVPSHNFILEYTFFTQRGYYPDSPDKENQDSFCISTNLQGNPNVHFFGVYDGHGQLGSQCSNFVKDRLVEKLVNDPALLEDPVQAYNSAFLATNQELRSSSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRKDEYERVKLCGARVLSVDQVEGLKDPDIQSWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVTALPEVKTFQLTPDHLFFVVASDGIFEFLTSQTVIDMAASYMDPRDACAAIAEKSYKLWLELENRTDDITIIIVQIKGTFRVGSDDINVGAVLNSGTGTPEIPAAHESDVHRSVRTSFSELHSDQPEASVMGPVHSAECTRPIE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01882 414 SMART PP2C_SIG_2 74 346 IPR001932 -
Vimu7g01882 414 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 348 - -
Vimu7g01882 414 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vimu7g01882 414 SMART PP2C_4 51 344 IPR001932 -
Vimu7g01882 414 SUPERFAMILY PP2C-like 47 348 IPR036457 -
Vimu7g01882 414 PANTHER PROTEIN PHOSPHATASE 71 345 IPR015655 GO:0004722|GO:0006470
Vimu7g01882 414 Pfam Protein phosphatase 2C 73 324 IPR001932 -
Vimu7g01882 414 CDD PP2Cc 71 346 IPR001932 -
Vimu7g01882 414 ProSiteProfiles PPM-type phosphatase domain profile. 55 346 IPR001932 -
Vimu7g01882 414 MobiDBLite consensus disorder prediction 369 414 - -
Vimu7g01882 414 Gene3D - 49 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01882 Vimu-Chr7 17098737 17101024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01882 1 347 PP2C-type Phosphatase Gene Family AT3G06270 70.201 6.71e-175 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01882 - - gmx:100797866 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01882 7 17098737 17101024 Vimu7g01882 7 17098737 17101024 ECH