Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01866 ATGGGCAGGTATCGAAGCCGGAGCAGAAGCTATAGTCCTCGGCGACGAAGCAGAACCCCGCCGCCACCTCCGTCGCGTGGTCGCAAGCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCATACAGGGACCGGCGCTCACCTCTTCCTTCTGGCTTACTCGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCCAAAAATTACTACACTGGTGAACCACGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGACGCAGCTGAGGCAAAACAACATCTTAATCACACTATCATTGGTGGACGTGAAATAAGAATTGTTTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTCTTAGTTCTCGAGGAAGGTTTCTCGATATGGGGGTGGTAGAAGGAGAAATCGATCTAGATCCCCACAACGTCGACATCGCTGTTAGTTTAACTACTCATCTCTATTCCGCTTATTCTCGGTCTCCATCACCTGCTAGGGATGATTCAAGTTGCATGGGCTTTCCCTACTTTGTGGTATTTGGTTTGTGCCTGAAGGAATGGTTAAAACGATTAAGAAAGAATATAAAGCTTATAGTTGGCCAAAGAAAATCACATCCTCAAAGAATGGAAGCCAAAGTTTATACAGGTAGATGTATGAAAGTTGGAACAAAGAGAGCTATGAAGTTACCAGATGCTGATCTTGCAGTACATCATAACTGTCAGTGTTTGGATCCAAGTGTTATATATTTGTCCAGAAACTTTGGAAAGGTACAGTGTTGGGATCCAAGTGTCATATTTGTCCAGAAACTATTGGAGAGGGATGACAGAGGTAGGGATGATTATTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTCTCTCCCCTGGCGGTGTGAAGGACTACAGGAAGTCCCCTCGGGAGAACGGTCGGAGTCCTAGTGACAAGAAGGCTCAGACGCCTAGCAGATCCCAGAGCCCTAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCATACAGGTATGAATATGAAGAGTATATTATTGATTGA 1113 0.46 MGRYRSRSRSYSPRRRSRTPPPPPSRGRKRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGRFLDMGVVEGEIDLDPHNVDIAVSLTTHLYSAYSRSPSPARDDSSCMGFPYFVVFGLCLKEWLKRLRKNIKLIVGQRKSHPQRMEAKVYTGRCMKVGTKRAMKLPDADLAVHHNCQCLDPSVIYLSRNFGKVQCWDPSVIFVQKLLERDDRGRDDYYSPERSRSYSRSLSPGGVKDYRKSPRENGRSPSDKKAQTPSRSQSPRGNDRSPSRSRSRSYRYEYEEYIID 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01866 370 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vimu7g01866 370 MobiDBLite consensus disorder prediction 351 370 - -
Vimu7g01866 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Vimu7g01866 370 MobiDBLite consensus disorder prediction 295 370 - -
Vimu7g01866 370 MobiDBLite consensus disorder prediction 27 45 - -
Vimu7g01866 370 MobiDBLite consensus disorder prediction 1 50 - -
Vimu7g01866 370 MobiDBLite consensus disorder prediction 333 350 - -
Vimu7g01866 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vimu7g01866 370 SUPERFAMILY RNA-binding domain, RBD 53 145 IPR035979 GO:0003676
Vimu7g01866 370 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 360 - -
Vimu7g01866 370 Gene3D - 27 153 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01866 Vimu-Chr7 16968967 16972741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01866 13 113 Eukaryotic Initiation Factors Gene Family AT3G11400 36.792 4.86e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01866 K12900 - gmx:100788749 224.557