Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g01862 | ATGAATGGCATGCGCGTTTATTTGTTCCGCACTACATCTAAGATTGTAGAACTGGCTCGTTCGGGTAAAATCATCCATGCTCGCAAACTGTTCGATGAATTACCTCATAAAGACTTGGTTGCATGGAATGCCATGCTAACCGCCTATTCCCACTTAGGACTTTACCAGCAGAGTCTTAGTCTCTTTGGTAGCATGAGAGTATCCCATTCCAAACTCGACAACTTCTCCTTCTCTGCAGCCTTAAACGCATGCGCTGGTGCATCCCATCTTCATTTTGGAGCAACACTACATGCTTTGGTAATTGTATCAGGCTACCTGTCTTGTCTTCCTGTGGCTAACTCGCTCATTGACATGTATGGCAAGTGTCTGCGTCCTGATGCTGCAAGAAAAGTGTACGATGAGATGAGTGATAGCAATGAAGTGACATGGTGTTCACTTCTGTTTGCTTATGCCAACTCTTACCGGTTTGATACGGCTATTAAACTGTTTCGCAGCATGCCTGAAAAGGTTGTGATTGCTTGGAATATAATGATTGCGGGTCATGCTCGTTGCGGTGAAGTTGAAGCTTGCTTGCATTTGTTTAAGGAGATGTGTGAGAGTTTGTGTCAGCCAGATCAGTGGACTTTTAGTGCTCTCGTGAACGCTTGTGCTGAGTCAATGGAAATGTTATACGGATGCATGGTGCATGGTTTTCTGATAAAATCTGGTTGGAGCTCAGCCATGGAGATTGTTTACCCTGACATGAAGTTCAAAACTAATGTCTTCCTTCCACGCGATGTTGGAAGGTTTACTCACTCTCTGTATTTTGATATTGCTCTAGCTGCTTCTGCAAAAGAGGCCTCAAGGGCCAAAAACATTGCTGAAAAGAAGATGCAAAACAGTGATTTTGCAGGGGCTCGTAAAATTGCTCTTAAAGCTCAGCAGCTGTACCCTGATCTGGAAAATATTGCTCAAATTCTTGTTGTCTGTGATGTGCACTGCTGTGCTGAGAAGAAATTGTATGGTAATGAAATAGATTGGTATGAAATTCTTCAGGTTGAACAGACGGCTGTTGATGCACTAATTAAGAAGCAATATAGAAAGTTTGCCCTCCAACTCCATCCTGACAAAAACAAGTTTCCTGGTGCTGAAGCCGCGTTTAAGCTGATTGGGGAAGCTCAAAGAGTACTTCTGGACAGAGAAAAACGTAATGTTTTTGACATGAAGCGTAGAGTTCCGATGAACAAACCTGCTACATCACATTTTAATACTACTGCGCCGAGGAATGTTAGGTCTAACTTTACAAGCTCAACTTCTCAGCAGCAGCAGCACCACCAAAATGGTGCACGAGATACATTTTGGACAGTCTGCCCATTTTGTTCTGTTAAGTATCAATATTACAAAGAAATTTTAAAGAAATCTCTTCGCTGTCAACAATGTAGCAGGCCCTTTGTTGCATATGAAGTGGGAAAACAAGGTACACCATCTCCTGCAACTAATTCAACTCAGCAAGCTTCTGACCAGCAGAAAGGTGGTTTGAATCATGGTGCTTTCAAGGTAGGTGCTGAATCTCAAAACAATTCACATGCTGAGAAATCCAATATAGGGTCATCTCCAGCAACTAATTCAACCCAGCAAGCTTCTGACCAACAGAAAGGTGGTTTGAATCATGGTGCTTTCAAGGTAGGTGCTGGATCTCGAAGCAATTCACATGCTGAGAAGTCCAATATGGGGTCATTTGATAAAAAGTTACCTGCTAGTGTTTCTCGAAAACATAATGGAAAGAGAAAAAGGAAGCAGGTGGCAGAATCCAGTGAAAGTTCTGTTCCTTTGATCCACAGTGATTCTGAAGAAGATGGAGTTGCTGGAAAGGATGGTCATTCCAAAGTAGAAAACCATTCAACTGCTAGAGAAGGGCATCTACGCAGATCTACCCGGAAAAGGCATCAGTTTTCCTACAAGGAGAATCTGAACAACATTGACGATGGTGAGAAAAGTAAAATGAATGACCCTAATGATTTACCTGCTGCACACAAAGAAGTAAATCAGAAAAAGCACCTGTATTCAGAAATAAATGAGGAAACTAACACATTTAAGGGAAAAGATGTGGTGGGAGGGGCAAAGCAGGTGGATGAAACCTCAGAGCATTCTCCAGATTCAACCTCCAAAGTATCAAATCAACCAAATGTTTATGCCTTCCTTGATGCAGAATTCAGTGATTTTGACAAGGACAAGAGAAAAGAATGTTTTGCTGCTGGGCAGATTTGGGCTGTTTATGACACGGCAGAAGGTATGCCTAGATTCTATGCTTTAATCAGGAAAGTTCTATCTCCTGGATTCAAACTGCGGTTAACATGGTTCGAATCACATCCAGACTGGAAGGATGAAATGAACTGGGTGAACGAGGAATTGCCTGTTGCTTGTGGGAAATATAAACTTGGTAACACTGATGTCACGGAAGATCGTCTGATGTTCTCTCATCTGGTTTTGTGTGAAAAAATTAGCCGTACTACTTTTAAAGTGTATCCTAGAAAGGGAGAAACTTGGGCCCTTTATAAAAATTGGGATATTAAATGGTACATGGATGCGAAATCTCACCAGCTTTATGAATATGAGTTTGTTGAAATCTTGACAGATTATGTTGAAGATGAGGGTGTATATGTTGTTTACTTGACTAAGTTGAAAGGTTTTGTAAGTATCTTCCTTCAAAATATAAAGGGGTCTAAAAAATCATTTCAAATTCCACCACGGGAGTTATTTAGATTCTCTCACAGGGTTCCATCTTTCAAAATGACTGGTGAGGAAAGGGCTGGTGTACCCTCAGGATCTTATGAACTTGATCCTGGAGCTTTGCCAGCACATTTTGAAGAGAAAGTTGGTGACGGCTCATCTGGCTGTGAGAATACAGGCACTTCAGATAGATCAGAATCCCTGATGTCTGAGGGAGGTAGGTCCACTCCCGAGGTTAATGGCAGCAATGATTGTTATGCTCCTCTGGCACCAGAAACAATTGCAATTCCAGATACTCGTTTCTTTAATTTTGACGCCGGGAGATCCCTTGAGAAGTTTCAGATTGGTCAAATTTGGGCATTTTACAGTGACGAGGATGGATTGCCAAAATATTACGGTCGCATTAATAAGATTGTGACTAGTCCTGATCTTGAATTGCATGTTTCCTGGCTTACTTGCTACTGGCTACCAGAGAATACCACTGAATGGGAGGACAGAGATATGGGTGTGCTTATTTCATGCGGTCGATATAACGTTAATAAAACAGATGAATTTCTCAGTATTTTTAGTACCACATCTTCTGTTTCACATCAAGTGCATGCTGAATCTGTTGGAAAGAATACAAAATATGCGATCTTTCCGAGGAAAGGTGAAGTTTGGGCGTTATATAGAAAATGGACAAATAAAATGAAGTGTTCTGAGTTGAAAAATTGGGAGTATGAGATAGTGGAAGTTATCGAAGAAACTGATTTGTTCATTATTGTCTCAGTTCTGGAGTTTGTCAGTGGGTTTAATTCCGTTTTCAGGGGCAAATCAAATGAAAGATCATCTGTCAAGCTGAGAATACCAAGAAAAGAGTTGCTTAGGTTCTCCCACCGAATCCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTCAGAGATTTCTGGGAACTTGATCCCGGTGCTCTACCAACACATTATTTTGGCTTGAGATGA | 3687 | 0.4142 | MNGMRVYLFRTTSKIVELARSGKIIHARKLFDELPHKDLVAWNAMLTAYSHLGLYQQSLSLFGSMRVSHSKLDNFSFSAALNACAGASHLHFGATLHALVIVSGYLSCLPVANSLIDMYGKCLRPDAARKVYDEMSDSNEVTWCSLLFAYANSYRFDTAIKLFRSMPEKVVIAWNIMIAGHARCGEVEACLHLFKEMCESLCQPDQWTFSALVNACAESMEMLYGCMVHGFLIKSGWSSAMEIVYPDMKFKTNVFLPRDVGRFTHSLYFDIALAASAKEASRAKNIAEKKMQNSDFAGARKIALKAQQLYPDLENIAQILVVCDVHCCAEKKLYGNEIDWYEILQVEQTAVDALIKKQYRKFALQLHPDKNKFPGAEAAFKLIGEAQRVLLDREKRNVFDMKRRVPMNKPATSHFNTTAPRNVRSNFTSSTSQQQQHHQNGARDTFWTVCPFCSVKYQYYKEILKKSLRCQQCSRPFVAYEVGKQGTPSPATNSTQQASDQQKGGLNHGAFKVGAESQNNSHAEKSNIGSSPATNSTQQASDQQKGGLNHGAFKVGAGSRSNSHAEKSNMGSFDKKLPASVSRKHNGKRKRKQVAESSESSVPLIHSDSEEDGVAGKDGHSKVENHSTAREGHLRRSTRKRHQFSYKENLNNIDDGEKSKMNDPNDLPAAHKEVNQKKHLYSEINEETNTFKGKDVVGGAKQVDETSEHSPDSTSKVSNQPNVYAFLDAEFSDFDKDKRKECFAAGQIWAVYDTAEGMPRFYALIRKVLSPGFKLRLTWFESHPDWKDEMNWVNEELPVACGKYKLGNTDVTEDRLMFSHLVLCEKISRTTFKVYPRKGETWALYKNWDIKWYMDAKSHQLYEYEFVEILTDYVEDEGVYVVYLTKLKGFVSIFLQNIKGSKKSFQIPPRELFRFSHRVPSFKMTGEERAGVPSGSYELDPGALPAHFEEKVGDGSSGCENTGTSDRSESLMSEGGRSTPEVNGSNDCYAPLAPETIAIPDTRFFNFDAGRSLEKFQIGQIWAFYSDEDGLPKYYGRINKIVTSPDLELHVSWLTCYWLPENTTEWEDRDMGVLISCGRYNVNKTDEFLSIFSTTSSVSHQVHAESVGKNTKYAIFPRKGEVWALYRKWTNKMKCSELKNWEYEIVEVIEETDLFIIVSVLEFVSGFNSVFRGKSNERSSVKLRIPRKELLRFSHRIPAFKLTEEHGNLRDFWELDPGALPTHYFGLR | 1228 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g01862 | 1228 | MobiDBLite | consensus disorder prediction | 409 | 441 | - | - | |
| Vimu7g01862 | 1228 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 170 | 204 | IPR002885 | - | |
| Vimu7g01862 | 1228 | Pfam | DnaJ domain | 339 | 400 | IPR001623 | - | |
| Vimu7g01862 | 1228 | CDD | DnaJ | 339 | 392 | IPR001623 | - | |
| Vimu7g01862 | 1228 | Gene3D | DnaJ domain | 336 | 445 | IPR036869 | - | |
| Vimu7g01862 | 1228 | MobiDBLite | consensus disorder prediction | 957 | 985 | - | - | |
| Vimu7g01862 | 1228 | Pfam | PPR repeat | 40 | 67 | IPR002885 | - | |
| Vimu7g01862 | 1228 | Pfam | PPR repeat | 141 | 169 | IPR002885 | - | |
| Vimu7g01862 | 1228 | Pfam | PPR repeat | 113 | 138 | IPR002885 | - | |
| Vimu7g01862 | 1228 | SMART | dnaj_3 | 338 | 395 | IPR001623 | - |
Showing 1 to 10 of 32 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g01862 | - | - | vun:114177826 | 1659.81 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu7g01862 | 7 | 16941182 | 16949594 | Vimu2g00968 | 2 | 6155259 | 6158150 | PCT |
Showing 1 to 1 of 1 entries