Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01862 ATGAATGGCATGCGCGTTTATTTGTTCCGCACTACATCTAAGATTGTAGAACTGGCTCGTTCGGGTAAAATCATCCATGCTCGCAAACTGTTCGATGAATTACCTCATAAAGACTTGGTTGCATGGAATGCCATGCTAACCGCCTATTCCCACTTAGGACTTTACCAGCAGAGTCTTAGTCTCTTTGGTAGCATGAGAGTATCCCATTCCAAACTCGACAACTTCTCCTTCTCTGCAGCCTTAAACGCATGCGCTGGTGCATCCCATCTTCATTTTGGAGCAACACTACATGCTTTGGTAATTGTATCAGGCTACCTGTCTTGTCTTCCTGTGGCTAACTCGCTCATTGACATGTATGGCAAGTGTCTGCGTCCTGATGCTGCAAGAAAAGTGTACGATGAGATGAGTGATAGCAATGAAGTGACATGGTGTTCACTTCTGTTTGCTTATGCCAACTCTTACCGGTTTGATACGGCTATTAAACTGTTTCGCAGCATGCCTGAAAAGGTTGTGATTGCTTGGAATATAATGATTGCGGGTCATGCTCGTTGCGGTGAAGTTGAAGCTTGCTTGCATTTGTTTAAGGAGATGTGTGAGAGTTTGTGTCAGCCAGATCAGTGGACTTTTAGTGCTCTCGTGAACGCTTGTGCTGAGTCAATGGAAATGTTATACGGATGCATGGTGCATGGTTTTCTGATAAAATCTGGTTGGAGCTCAGCCATGGAGATTGTTTACCCTGACATGAAGTTCAAAACTAATGTCTTCCTTCCACGCGATGTTGGAAGGTTTACTCACTCTCTGTATTTTGATATTGCTCTAGCTGCTTCTGCAAAAGAGGCCTCAAGGGCCAAAAACATTGCTGAAAAGAAGATGCAAAACAGTGATTTTGCAGGGGCTCGTAAAATTGCTCTTAAAGCTCAGCAGCTGTACCCTGATCTGGAAAATATTGCTCAAATTCTTGTTGTCTGTGATGTGCACTGCTGTGCTGAGAAGAAATTGTATGGTAATGAAATAGATTGGTATGAAATTCTTCAGGTTGAACAGACGGCTGTTGATGCACTAATTAAGAAGCAATATAGAAAGTTTGCCCTCCAACTCCATCCTGACAAAAACAAGTTTCCTGGTGCTGAAGCCGCGTTTAAGCTGATTGGGGAAGCTCAAAGAGTACTTCTGGACAGAGAAAAACGTAATGTTTTTGACATGAAGCGTAGAGTTCCGATGAACAAACCTGCTACATCACATTTTAATACTACTGCGCCGAGGAATGTTAGGTCTAACTTTACAAGCTCAACTTCTCAGCAGCAGCAGCACCACCAAAATGGTGCACGAGATACATTTTGGACAGTCTGCCCATTTTGTTCTGTTAAGTATCAATATTACAAAGAAATTTTAAAGAAATCTCTTCGCTGTCAACAATGTAGCAGGCCCTTTGTTGCATATGAAGTGGGAAAACAAGGTACACCATCTCCTGCAACTAATTCAACTCAGCAAGCTTCTGACCAGCAGAAAGGTGGTTTGAATCATGGTGCTTTCAAGGTAGGTGCTGAATCTCAAAACAATTCACATGCTGAGAAATCCAATATAGGGTCATCTCCAGCAACTAATTCAACCCAGCAAGCTTCTGACCAACAGAAAGGTGGTTTGAATCATGGTGCTTTCAAGGTAGGTGCTGGATCTCGAAGCAATTCACATGCTGAGAAGTCCAATATGGGGTCATTTGATAAAAAGTTACCTGCTAGTGTTTCTCGAAAACATAATGGAAAGAGAAAAAGGAAGCAGGTGGCAGAATCCAGTGAAAGTTCTGTTCCTTTGATCCACAGTGATTCTGAAGAAGATGGAGTTGCTGGAAAGGATGGTCATTCCAAAGTAGAAAACCATTCAACTGCTAGAGAAGGGCATCTACGCAGATCTACCCGGAAAAGGCATCAGTTTTCCTACAAGGAGAATCTGAACAACATTGACGATGGTGAGAAAAGTAAAATGAATGACCCTAATGATTTACCTGCTGCACACAAAGAAGTAAATCAGAAAAAGCACCTGTATTCAGAAATAAATGAGGAAACTAACACATTTAAGGGAAAAGATGTGGTGGGAGGGGCAAAGCAGGTGGATGAAACCTCAGAGCATTCTCCAGATTCAACCTCCAAAGTATCAAATCAACCAAATGTTTATGCCTTCCTTGATGCAGAATTCAGTGATTTTGACAAGGACAAGAGAAAAGAATGTTTTGCTGCTGGGCAGATTTGGGCTGTTTATGACACGGCAGAAGGTATGCCTAGATTCTATGCTTTAATCAGGAAAGTTCTATCTCCTGGATTCAAACTGCGGTTAACATGGTTCGAATCACATCCAGACTGGAAGGATGAAATGAACTGGGTGAACGAGGAATTGCCTGTTGCTTGTGGGAAATATAAACTTGGTAACACTGATGTCACGGAAGATCGTCTGATGTTCTCTCATCTGGTTTTGTGTGAAAAAATTAGCCGTACTACTTTTAAAGTGTATCCTAGAAAGGGAGAAACTTGGGCCCTTTATAAAAATTGGGATATTAAATGGTACATGGATGCGAAATCTCACCAGCTTTATGAATATGAGTTTGTTGAAATCTTGACAGATTATGTTGAAGATGAGGGTGTATATGTTGTTTACTTGACTAAGTTGAAAGGTTTTGTAAGTATCTTCCTTCAAAATATAAAGGGGTCTAAAAAATCATTTCAAATTCCACCACGGGAGTTATTTAGATTCTCTCACAGGGTTCCATCTTTCAAAATGACTGGTGAGGAAAGGGCTGGTGTACCCTCAGGATCTTATGAACTTGATCCTGGAGCTTTGCCAGCACATTTTGAAGAGAAAGTTGGTGACGGCTCATCTGGCTGTGAGAATACAGGCACTTCAGATAGATCAGAATCCCTGATGTCTGAGGGAGGTAGGTCCACTCCCGAGGTTAATGGCAGCAATGATTGTTATGCTCCTCTGGCACCAGAAACAATTGCAATTCCAGATACTCGTTTCTTTAATTTTGACGCCGGGAGATCCCTTGAGAAGTTTCAGATTGGTCAAATTTGGGCATTTTACAGTGACGAGGATGGATTGCCAAAATATTACGGTCGCATTAATAAGATTGTGACTAGTCCTGATCTTGAATTGCATGTTTCCTGGCTTACTTGCTACTGGCTACCAGAGAATACCACTGAATGGGAGGACAGAGATATGGGTGTGCTTATTTCATGCGGTCGATATAACGTTAATAAAACAGATGAATTTCTCAGTATTTTTAGTACCACATCTTCTGTTTCACATCAAGTGCATGCTGAATCTGTTGGAAAGAATACAAAATATGCGATCTTTCCGAGGAAAGGTGAAGTTTGGGCGTTATATAGAAAATGGACAAATAAAATGAAGTGTTCTGAGTTGAAAAATTGGGAGTATGAGATAGTGGAAGTTATCGAAGAAACTGATTTGTTCATTATTGTCTCAGTTCTGGAGTTTGTCAGTGGGTTTAATTCCGTTTTCAGGGGCAAATCAAATGAAAGATCATCTGTCAAGCTGAGAATACCAAGAAAAGAGTTGCTTAGGTTCTCCCACCGAATCCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTCAGAGATTTCTGGGAACTTGATCCCGGTGCTCTACCAACACATTATTTTGGCTTGAGATGA 3687 0.4142 MNGMRVYLFRTTSKIVELARSGKIIHARKLFDELPHKDLVAWNAMLTAYSHLGLYQQSLSLFGSMRVSHSKLDNFSFSAALNACAGASHLHFGATLHALVIVSGYLSCLPVANSLIDMYGKCLRPDAARKVYDEMSDSNEVTWCSLLFAYANSYRFDTAIKLFRSMPEKVVIAWNIMIAGHARCGEVEACLHLFKEMCESLCQPDQWTFSALVNACAESMEMLYGCMVHGFLIKSGWSSAMEIVYPDMKFKTNVFLPRDVGRFTHSLYFDIALAASAKEASRAKNIAEKKMQNSDFAGARKIALKAQQLYPDLENIAQILVVCDVHCCAEKKLYGNEIDWYEILQVEQTAVDALIKKQYRKFALQLHPDKNKFPGAEAAFKLIGEAQRVLLDREKRNVFDMKRRVPMNKPATSHFNTTAPRNVRSNFTSSTSQQQQHHQNGARDTFWTVCPFCSVKYQYYKEILKKSLRCQQCSRPFVAYEVGKQGTPSPATNSTQQASDQQKGGLNHGAFKVGAESQNNSHAEKSNIGSSPATNSTQQASDQQKGGLNHGAFKVGAGSRSNSHAEKSNMGSFDKKLPASVSRKHNGKRKRKQVAESSESSVPLIHSDSEEDGVAGKDGHSKVENHSTAREGHLRRSTRKRHQFSYKENLNNIDDGEKSKMNDPNDLPAAHKEVNQKKHLYSEINEETNTFKGKDVVGGAKQVDETSEHSPDSTSKVSNQPNVYAFLDAEFSDFDKDKRKECFAAGQIWAVYDTAEGMPRFYALIRKVLSPGFKLRLTWFESHPDWKDEMNWVNEELPVACGKYKLGNTDVTEDRLMFSHLVLCEKISRTTFKVYPRKGETWALYKNWDIKWYMDAKSHQLYEYEFVEILTDYVEDEGVYVVYLTKLKGFVSIFLQNIKGSKKSFQIPPRELFRFSHRVPSFKMTGEERAGVPSGSYELDPGALPAHFEEKVGDGSSGCENTGTSDRSESLMSEGGRSTPEVNGSNDCYAPLAPETIAIPDTRFFNFDAGRSLEKFQIGQIWAFYSDEDGLPKYYGRINKIVTSPDLELHVSWLTCYWLPENTTEWEDRDMGVLISCGRYNVNKTDEFLSIFSTTSSVSHQVHAESVGKNTKYAIFPRKGEVWALYRKWTNKMKCSELKNWEYEIVEVIEETDLFIIVSVLEFVSGFNSVFRGKSNERSSVKLRIPRKELLRFSHRIPAFKLTEEHGNLRDFWELDPGALPTHYFGLR 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 409 441 - -
Vimu7g01862 1228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Vimu7g01862 1228 Pfam DnaJ domain 339 400 IPR001623 -
Vimu7g01862 1228 CDD DnaJ 339 392 IPR001623 -
Vimu7g01862 1228 Gene3D DnaJ domain 336 445 IPR036869 -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 957 985 - -
Vimu7g01862 1228 Pfam PPR repeat 40 67 IPR002885 -
Vimu7g01862 1228 Pfam PPR repeat 141 169 IPR002885 -
Vimu7g01862 1228 Pfam PPR repeat 113 138 IPR002885 -
Vimu7g01862 1228 SMART dnaj_3 338 395 IPR001623 -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 486 504 - -
Vimu7g01862 1228 Pfam PPR repeat family 171 217 IPR002885 -
Vimu7g01862 1228 Pfam Domain of unknown function (DUF3444) 724 928 IPR024593 -
Vimu7g01862 1228 Pfam Domain of unknown function (DUF3444) 995 1205 IPR024593 -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 513 546 - -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 950 985 - -
Vimu7g01862 1228 Coils Coil 1228 1228 - -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 484 644 - -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 410 441 - -
Vimu7g01862 1228 MobiDBLite consensus disorder prediction 610 632 - -
Vimu7g01862 1228 FunFam Pentatricopeptide repeat-containing protein mitochondrial 100 223 - -
Vimu7g01862 1228 PRINTS DnaJ domain signature 359 374 IPR001623 -
Vimu7g01862 1228 PRINTS DnaJ domain signature 375 395 IPR001623 -
Vimu7g01862 1228 PRINTS DnaJ domain signature 341 359 IPR001623 -
Vimu7g01862 1228 NCBIfam pentatricopeptide repeat 173 205 IPR002885 -
Vimu7g01862 1228 ProSiteProfiles dnaJ domain profile. 339 403 IPR001623 -
Vimu7g01862 1228 SUPERFAMILY Chaperone J-domain 334 405 IPR036869 -
Vimu7g01862 1228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 38 72 IPR002885 -
Vimu7g01862 1228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 169 IPR002885 -
Vimu7g01862 1228 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 278 1221 - -
Vimu7g01862 1228 Gene3D Tetratricopeptide repeat domain 103 227 IPR011990 GO:0005515
Vimu7g01862 1228 Gene3D Tetratricopeptide repeat domain 8 94 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01862 Vimu-Chr7 16941182 16949594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01862 279 482 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.885 2.73e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01862 - - vun:114177826 1659.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01862 7 16941182 16949594 Vimu2g00968 2 6155259 6158150 PCT