Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01857 ATGTCTACCATGCTTCTTGGAGCAATGTTCCACAAACTCACCACAGTCATGACCTCTGATCATGCTTCTGTTGTCTCTATGAACATTTTTGTCGCCCTTCTGTGTGCCTGCATCATCATCGGTCATCTGTTGGAAGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTAATGGGTCTTTGTACTGGGGTCTTTATACTGCTTACTACTGGAGGAAAAAGCTCTCATATACTAGTCTTCAGTGAAGATCTTTTCTTCATTTACCTTCTCCCACCCATCATTTTCAATGCCGGGTTTCAAGTGAAGAAGAAACAATTTTTCCGCAACTTTATGACTATTATGCTCTTTGGTGCAATTGGTACTTTGATATCATTCTGCATCATATCACTGGGTGCCATACATTTTTTTCAGAAGTTGGACATTGATTCCCTCAAGATTGGAGATTTTCTTGCAATTGGAGCAATATTTTCAGCAACAGATTCAGTTTGCACGTTGCAGGTTCTTAATCAGGATGAGACTCCTTTACTATATAGCCTGGTCTTTGGGGAAGGAGTAGTCAATGATGCTACCTCTGTAGTCCTCTTCAAAGCAATTCAAAATTTTGACCTCTCTCACATTGACTCAAATACTGCCTTACAGTTAATAGGAAATTTTTTATATCTATTCATTGCAAGCACTGTGTTGGGAATCTTTGCTGGATTGCTTAGTGCTTACATAATAAAAAAACTCTATTTTGACAAGCTAATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTGGCTGAACTATTTTCTTTGAGTGCCATTCTGACTGTTTTCTTCTGCGGAATTGTGATGTCTCACTACACGTGGCATAATGTAACTGAAAGTTCAAGGGTGACAACAAAGCATGTTTTTGCCACTTTGTCATTCATTGCTGAAATCTTCATCTTCCTCTATGTGGGGATGGACGCATTAGATATAGAGAAGTGGCGAATCGTAAGTGAAAGCCCAAGAAAATCTATTGGGGTCAGTTCGTTGCTGTTGGCACTTATTCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTGTCCTTCTTATCCAACTTGCTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAGCAACAAGTGACAATTTGGTGGGCTGGTCTCATGCGTGGAGCAGTTTCTATCGCACTTGCTTACAATCAGTTTACACGGTTGGGCCATACTAAATTGCGTGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGGCATTTGGGTTGATGACAAAGCCACTTGTAAGGCTATTGCTTCCTTCGTCAAAGCATGTGATGAGCTTGGCGTCCCCACCATCGACACCAAAATCATTCACAGTGCCACTTCTTTGCAGTGGAAGAGAGGATTCATCATGGACCAATGGTGGCACCCCAAATGGGCCTCCTCCAACCACCACCTTTAGAATGCTACTAAGCTCCATTCCTACTCGTGGGGTGCACCACTATTGGCGCAAGTTTGATGATTCTGTCATGCGACCCGTGTTTGGTGGACGAGGTTTTGTGCCCTATGTTCCCGGGTCACCCCTTGAACAAAGTGTTCATCAGTGGCATACCAGTTAG 1653 0.4247 MSTMLLGAMFHKLTTVMTSDHASVVSMNIFVALLCACIIIGHLLEENRWINESITALLMGLCTGVFILLTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQKLDIDSLKIGDFLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDSNTALQLIGNFLYLFIASTVLGIFAGLLSAYIIKKLYFDKLIRHSTDREVALMVLMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATLSFIAEIFIFLYVGMDALDIEKWRIVSESPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLLKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTLAFGLMTKPLVRLLLPSSKHVMSLASPPSTPKSFTVPLLCSGREDSSWTNGGTPNGPPPTTTFRMLLSSIPTRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEQSVHQWHTS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01857 550 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu7g01857 550 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu7g01857 550 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu7g01857 550 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu7g01857 550 Pfam Sodium/hydrogen exchanger family 29 447 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu7g01857 550 PANTHER SODIUM/HYDROGEN EXCHANGER 18 526 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vimu7g01857 550 Coils Coil 367 387 - -
Vimu7g01857 550 Gene3D - 146 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01857 Vimu-Chr7 16893123 16896607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01857 5 546 Antiporters AT3G05030 72.844 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01857 - - ccaj:109808409 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01857 7 16893123 16896607 Vimu7g01857 7 16893123 16896607 ECH