Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01856 ATGCCTTCCATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCATGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACGGCGGAGAAGCGTGGTGGCTTGCGCCGGAGTGTGCCGCACCTGGAGGCTGATCATCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACGTCTACTTCAGTGCTTCATTAGGCGCAATAATGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAATTCCTTTTAGCCGCGCGAAAGTTCAGACGCCCAACCTACACAGATTATAATATCTCCCTGGATGCGGATTATATGTCCAGGGAAAGCAATGCCTACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAGTCTACGATATCCAACTGCCTCATTCAAGGGAAAATATGGCAAAAAGTTGCTCCACTAAGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTACAGGCAACTACCCAGTTGCCCATATCTCATATGAATTGAATGTATTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGATAGCATTCCTGCTTCTGCTATTGAACCAGAATGGGTAGCTCCTTCACAGACCAGTTATTCTGTTAGTGACATAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATATGGAAAACTCCATATCTGGAGAGCAGAACAATAAAAGAGATGACGTTCTAGTGTTGAGAAATAAGGCTGCTAGGTGGCATGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAGTTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGCCAGTAAATGGACATGCTGAACCACAAGAGGATGATGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACGGTTGCTTGCGAATGA 1092 0.4625 MPSMDDGLEQSWWANMPHELLREVLLRIESSEAKWPRRRSVVACAGVCRTWRLIIKEIVKPPQLSSNITFPISLKQPGPRERLLQCFIRRNNGTQTYYLFLSLSSALADDGKFLLAARKFRRPTYTDYNISLDADYMSRESNAYIGKLRSNFLGTKFTVYDIQLPHSRENMAKSCSTKLVNPKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDSIPASAIEPEWVAPSQTSYSVSDIGTSFPFFQTNSTHMENSISGEQNNKRDDVLVLRNKAARWHEQMQCWCLNFHGRVTVASVKNFQLAALPVNGHAEPQEDDVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01856 363 Gene3D Tubby Protein; Chain A 71 363 IPR025659 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 320 339 IPR000007 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 144 168 IPR000007 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 293 309 IPR000007 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 275 292 IPR000007 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 193 220 IPR000007 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 128 144 IPR000007 -
Vimu7g01856 363 PRINTS Tubby superfamily signature 341 363 IPR000007 -
Vimu7g01856 363 Pfam Tub family 74 358 IPR000007 -
Vimu7g01856 363 Pfam F-box domain 13 59 IPR001810 GO:0005515
Vimu7g01856 363 SUPERFAMILY F-box domain 5 56 IPR036047 GO:0005515
Vimu7g01856 363 CDD F-box_AtTLP-like 13 57 - -
Vimu7g01856 363 ProSitePatterns Tub family signature 1. 293 306 IPR018066 -
Vimu7g01856 363 PANTHER TUBBY-RELATED 10 360 - -
Vimu7g01856 363 SUPERFAMILY Tubby C-terminal domain-like 62 363 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01856 Vimu-Chr7 16881612 16883588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01856 6 363 TUB Transcription Factor Family AT2G47900 65.565 8.39e-170 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu7g01856 Tub 6.5e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01856 K19600 - gmx:100794141 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01856 7 16881612 16883588 Vimu7g01856 7 16881612 16883588 ECH
Vimu7g01856 7 16881612 16883588 Vimu2g00958 2 6087414 6091153 PCT