Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01849 ATGCAAGGTCACACTACGAAAAAGGAAACTGAAACTCATTCTACCATGCCACCATTCTCTCAAATCCCACTTTCTTCTTCTTCTTTTCTTCACCCTTCAACCATTGCCGAAGCAACTGCTAACATCACCAGCAGAAAGCGTGTTAAGAGAACGAGTCACTCCAATTGTGGGAGCGTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCTGTCCCTGGTCTCTTACCTCAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAGAGATTGGAGGAGTTGAAGAAGTTGAAGGAGACCATGAAAGGAGTGGAAGGATCCACGGTTGAATGTGGTAACAATAATAGAAATTGTTCAATCGTGGTTACTGTTTCTGCTAATGTTGCATTCTTTGGTATTCAATGGGTGCCTCGACCAGGTTTGGTGACACAAATTTTGAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCGATCACAGCTTTGGTACAAAACAATGGAAACTGTGTGGTTGAAAAGATTAAAAGAGAAATTATGGGTTTGTAG 642 0.4112 MQGHTTKKETETHSTMPPFSQIPLSSSSFLHPSTIAEATANITSRKRVKRTSHSNCGSVNMERERRSKMTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKKLKETMKGVEGSTVECGNNNRNCSIVVTVSANVAFFGIQWVPRPGLVTQILKVFCNHQAEILAANVTVNNGKLILAITALVQNNGNCVVEKIKREIMGL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01849 213 Pfam Helix-loop-helix DNA-binding domain 61 104 IPR011598 GO:0046983
Vimu7g01849 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vimu7g01849 213 SMART finulus 59 109 IPR011598 GO:0046983
Vimu7g01849 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 115 IPR036638 GO:0046983
Vimu7g01849 213 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 43 197 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vimu7g01849 213 MobiDBLite consensus disorder prediction 1 27 - -
Vimu7g01849 213 Coils Coil 93 123 - -
Vimu7g01849 213 Gene3D - 39 131 IPR036638 GO:0046983
Vimu7g01849 213 MobiDBLite consensus disorder prediction 12 27 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01849 31 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.458 6.98e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01849 - - gmx:102670256 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01849 7 16844765 16845564 Vimu7g01849 7 16844765 16845564 ECH