Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01847 ATGGAAGGTTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGAATACGGCATTACAGGAGAAGATGCAGGATTCGTGCCCCCTGCTGCAACGAGATCCATTCATGCCGTCACTGTCACAACGAGGAAGCGGTATTTCGCCTTCAGTTTGTCGAAGAATTCATTTGATCGCCACGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAATCTGTTGCTCAAGTTTGCACTAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATATGTAAATTCTTCGATGATGATACAGAGAAACAGCAGTTTCATTGTGATGATTGCGGGATCTGCAGGTGTGGTTGGTGGTCGGGAAAATTTTTTCCACTGCAAGAAGTGCGGTATGCATTTGTCACCAAGTCTGCCTTTGACTTCTGTAGTAATGAACTATGCTCTACAGGGTCTTGTTATTCAATTGGTCTGCGTGATAATCATTTATGTGTGGAGAACTCAATGAGGCATCACTGCCCCATTTGTTATGAGTACCTATTTGATTCATTGAAAGACACGGTTGTTATGAAATGTGGTCACACAATGCACCAAGAATGTTACCACGAGATGGTAAATCGTGATAGGTATTGCTGTCCCATATGCTCCAAGTCGGTGGTGGACATGTCCAGGACGTGGAGGAGAATTGATGAAGAGATTGAAGCATCTATCATGCCTGAAGATTATCGATACAGGAAGGTCTGGATACTATGTAACGACTGCAATGACACAACAGAAGTTAACTTCCACATTCTTGGCCATAAATGCGGTCATTGCAATTCATATAATACTCGCTCAATTGCGCCTCCAGTTCTTCCTCAATGA 873 0.4307 MEGSVNERLDFGKMEYGITGEDAGFVPPAATRSIHAVTVTTRKRYFAFSLSKNSFDRHELVRQDVKQVVCSVCDTEQSVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDDCGICRCGWWSGKFFPLQEVRYAFVTKSAFDFCSNELCSTGSCYSIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTVVMKCGHTMHQECYHEMVNRDRYCCPICSKSVVDMSRTWRRIDEEIEASIMPEDYRYRKVWILCNDCNDTTEVNFHILGHKCGHCNSYNTRSIAPPVLPQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01847 290 ProSiteProfiles Zinc finger CHY-type profile. 20 88 IPR008913 GO:0008270
Vimu7g01847 290 Pfam Ring finger domain 175 218 IPR001841 -
Vimu7g01847 290 Gene3D - 250 285 - -
Vimu7g01847 290 Pfam Zinc-ribbon 223 281 IPR039512 -
Vimu7g01847 290 FunFam RING finger and CHY zinc finger domain-containing protein 1 247 288 - -
Vimu7g01847 290 SUPERFAMILY CHY zinc finger-like 53 89 IPR037274 GO:0008270
Vimu7g01847 290 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 45 286 - -
Vimu7g01847 290 Pfam CHY zinc finger 35 100 IPR008913 GO:0008270
Vimu7g01847 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Vimu7g01847 290 ProSiteProfiles Zinc finger RING-type profile. 176 219 IPR001841 -
Vimu7g01847 290 SUPERFAMILY RING/U-box 175 223 - -
Vimu7g01847 290 ProSiteProfiles Zinc finger CTCHY-type profile. 90 175 IPR017921 -
Vimu7g01847 290 SMART ring_2 176 218 IPR001841 -
Vimu7g01847 290 SUPERFAMILY Zinc hairpin stack 91 125 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01847 Vimu-Chr7 16833502 16836265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01847 58 289 C2H2 Transcription Factor Family AT3G18290 36.864 8.85e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01847 K10144 - gmx:100792038 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01847 7 16833502 16836265 Vimu7g01847 7 16833502 16836265 ECH
Vimu7g01847 7 16833502 16836265 Vimu2g00948 2 6045903 6050332 PCT