Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01845 ATGGGGAGGCCCTCCAAGACGCAGGTTTCCAACGACACAACCTCCGACGAGGAGGAGGAGGACGTCGCCGCCGACAACCACCAGATCGAAGACGACGACGAGGAGCTTCAAGCGGTGGCGCAATCCGCAAGCTCCGACGACGACGATAACTCTCCGGACGAAGCCGCCGATGACGACGACGATAATAAACAGGATGAGAGTAATGTTGATCCTGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAAGGAAATGCAAACGTTAAAGAAACAGAAGATTCAGGAGATATTGGATGCTCAAAACGCGACCATTGATGCTGACATGAATAATAGAGGAAAGGGCCGATTAAAGTATCTCCTGCAGCAAACTGAGCTGTTTGCCCATTTTGCCAAGGGTGATCAATCTTCTCAAAAGAAGACAAAAGGAAGGGGTCGCCATGCATCGAAGGTCACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGGGGAGGAAGATGGTTTAGCAAACACACGGCTGGTGTCTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTAATACGATTGTATGAGAACGGTATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGAAAAACCTTGCAAACTATATCTTTGTTAGGCTACTTACACGAGTTCAGAGGAATAACAGGTCCCCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGTCGCTTCTGCCCTGTTTTACGTGCTATAAAGTTTCTTGGCAACCCTGATGAGAGGAAGCACATAAGAGAAGAGTTACTCGTTGCTGGTAAGTTTGATGTCTGTGTTACAAGTTTTGAAATGAATAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAGCAAGAAGTTGTTCAACAACTGCACAAGGTGCTTCGTCCATTTCTTCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTACCACCAAAAAAGGAAACAATTCTCAAGGTGGGCATGTCACAAATGCAGAAACAGTATTATAAGGCGTTACTTCAGAAGGATCTAGAGGTGGTCAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGAAAATGTTGTAATCACCCATATCTCTTTCAAGGTGCTGAACCTGGTCCACCCTTTACAACAGGAGACCATCTCATTACAAATGCTGGCAAGATGGTTCTTCTGGATAAGTTACTTCCAAAACTAAAAGAGCGTGATTCCAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTTATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAATTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCTACTCGGGCAGGTGGCCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGCGACTGGAACCCTCAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGAATTGGCCAGAAAAAAGAAGTTCAAGTTTTTCGATTTTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTAGCTGAACAGAAGACTGTAAATAAAGACGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACTATTACAGATGAAGATATCGACAGAATTATTGCTAAAGGAGAGGAAGCAACTGCTGAGCTTGATGCAAAGATGAAAAAATTTACGGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGACTTTGATGATGAGAAGGATGAAAACAAATTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCGCCAAGAAGAGAACGGAAGCGCAATTATTCAGAGTCTGATTATTTCAAGCAAACAATGCGCCAAGGTGCTCCAACTAAACCTAAAGAACCACGCATACCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTACCTCATGCAAACACATCAGAAGAATCAGTTAAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTTGGTGATCCATTAACTGCTGAAGAGTTAGAAGAGAAGGAGCAGTTGCTTGAAGAGGGATTTTCGTCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACGCAAGAGGAGGTTGAAAGATATGCAAAAGTTTTCAGAGAAAGATACAGGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGTGAGGCAAGAATAACCCGGAAAGATGAAATCATGAAAGCCATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAAAACAAAGGGAAGCTATACAACGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTACGGTAATTGGGATGAGTTGAAGGCAGCTTTCCGCATGTCTCCCTTATTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAACTTACTAGGAGGTGTGACACTCTCATTCGGCTGGTGGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTTGCGGCTAAGAGCATGACCCCGTCGAAGCGTTCCATGTCTAGACAGAACGATAGTCCCTCGGTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTAAGCTCGGGGAAGAAGAAAAAATAA 3018 0.4192 MGRPSKTQVSNDTTSDEEEEDVAADNHQIEDDDEELQAVAQSASSDDDDNSPDEAADDDDDNKQDESNVDPEVSKREKARLKEMQTLKKQKIQEILDAQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESDYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFRERYRELNDYDRIIKNIERGEARITRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMSRQNDSPSVKKRKQLTMDDYLSSGKKKK 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01845 1005 Gene3D - 292 346 IPR038718 -
Vimu7g01845 1005 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 435 586 IPR001650 -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 1 79 - -
Vimu7g01845 1005 SMART helicmild6 461 545 IPR001650 -
Vimu7g01845 1005 FunFam ISWI chromatin-remodeling complex ATPase CHR11 682 780 - -
Vimu7g01845 1005 CDD SF2_C_SNF 431 556 - -
Vimu7g01845 1005 SUPERFAMILY Homeodomain-like 784 834 IPR009057 -
Vimu7g01845 1005 Gene3D - 351 643 IPR027417 -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 133 154 - -
Vimu7g01845 1005 FunFam ISWI chromatin-remodeling complex ATPase CHR11 351 643 - -
Vimu7g01845 1005 Gene3D - 869 972 - -
Vimu7g01845 1005 CDD SANT 784 825 IPR001005 -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 130 160 - -
Vimu7g01845 1005 Pfam SNF2-related domain 195 291 IPR000330 GO:0005524|GO:0140658
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 14 37 - -
Vimu7g01845 1005 Pfam SLIDE 838 948 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vimu7g01845 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 628 IPR027417 -
Vimu7g01845 1005 Pfam Helicase conserved C-terminal domain 433 545 IPR001650 -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 952 969 - -
Vimu7g01845 1005 Coils Coil 81 101 - -
Vimu7g01845 1005 Pfam SNF2-related domain 292 410 IPR000330 GO:0005524|GO:0140658
Vimu7g01845 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 345 IPR027417 -
Vimu7g01845 1005 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 693 783 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vimu7g01845 1005 Gene3D iswi atpase 836 868 - -
Vimu7g01845 1005 Gene3D - 151 291 IPR038718 -
Vimu7g01845 1005 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 781 835 - -
Vimu7g01845 1005 FunFam ISWI chromatin-remodeling complex ATPase CHR11 869 973 - -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 952 1005 - -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 981 1005 - -
Vimu7g01845 1005 Gene3D - 781 835 - -
Vimu7g01845 1005 Gene3D ISWI, HAND domain 682 780 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vimu7g01845 1005 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 292 985 - -
Vimu7g01845 1005 SMART ultradead3 178 360 IPR014001 -
Vimu7g01845 1005 MobiDBLite consensus disorder prediction 47 66 - -
Vimu7g01845 1005 Coils Coil 931 965 - -
Vimu7g01845 1005 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 291 IPR014001 -
Vimu7g01845 1005 ProSiteProfiles SANT domain profile. 780 832 IPR017884 -
Vimu7g01845 1005 SMART sant 883 944 IPR001005 -
Vimu7g01845 1005 SMART sant 781 830 IPR001005 -
Vimu7g01845 1005 Pfam HAND 694 777 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vimu7g01845 1005 SUPERFAMILY Homeodomain-like 836 958 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01845 Vimu-Chr7 16819259 16828632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01845 430 591 RAD5 or RAD16-like Gene Family AT5G43530 37.278 1.74e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu7g01845 SNF2_N 3.6e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01845 K11654 - gmx:100791510 1845.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01845 7 16819259 16828632 Vimu7g01845 7 16819259 16828632 ECH
Vimu7g01845 7 16819259 16828632 Vimu2g00946 2 6016506 6028648 PCT