Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01844 ATGGGTTCTATTCTCTCTTGCTTTAATGGATTAGCAACCATGGGGGAATCTGACGACAGCACACTTACTGCTCTTGGCTCTACCACAGATAGAAGAGCAAGATCAGAGAGTCCAATTGTCATTAAACGTGCAAAAGTATTTTCATACATAGAGCTTGCAGCAGCTACAAAGCATTTCAGGTCAAGATTTCTGCTAGGTAGAGGGGGCTCTGGGAGTGTGTACAAAGGTCGACTCAAAAATGGCCAAGATGTTGCTGTGAAAGTGCTTGAAAAAAATTCCCAACAAAAAGACGGAGAGTTTGTCGCCGAGGTTGAGATGTTGTCTCTCTTGTATCACCCAAATCTTGTGACACTGATTGGTTACTGTTGCGAATGTGATCAACGGCTACTTGTTTACGAGTATACGCCATTGGGGTCCTTGGAGAATCATTTATTCGATCTTCCTCCTCGCAGGGAACCACTTGACTGGAATACAAGGATGAAGATAGCAAGCGGTGTGGCAAAGGGATTGGAGTATTTGGAGTTTTATAGAGACCTTCCTGTGATGTTTGGAGAGTTAAAATCATCGAACATCCTCCTGGACGAGGGTTATCATCCCAAGTTGTCTTATTTTGCGACCGTTGGTAATAGCAGTCATGTTTCAACAGGAAAATATGAAGTGACCGGCAAGCTAACTCCGGAATGTAATGTCTACGGTTTGGGAGTGGTCCTTCTGGAACTCATTTCGGGGCGGAAGGCCATTGATAAGAGTCGTTCCCCTGAAACGTGCCATCTTGTTAAGTGGGCACAACCTATTTTGAAGGACAATAGTCAGTTCTATAGATTGGTGGATCCTCTACTTCACGGGATATATCCAGAGGAATGGGTTAATCAGACGATTGATATTGCAGCTATGTGTTTGCATGAAAAAGCTGATAGAAGGCCTGCGATACGGGAAGTGGTTTTTGCTCTAACGAACATGGAATCAAAGTGTGACAGAAGGGGTGGACTCCCATGCGCATTCTTCTACCCATCTCTTGGCAGAAAAGAAACTGGATTGGAAAAAGAACGGAAGAAAGGGGATTTTGAGAGAGGCAATTACAGTTATGCTGCAAATATTCGAAAGCAAGGAGTTTCGTACGTAGAAATGCTAAAGATGTGA 1140 0.4377 MGSILSCFNGLATMGESDDSTLTALGSTTDRRARSESPIVIKRAKVFSYIELAAATKHFRSRFLLGRGGSGSVYKGRLKNGQDVAVKVLEKNSQQKDGEFVAEVEMLSLLYHPNLVTLIGYCCECDQRLLVYEYTPLGSLENHLFDLPPRREPLDWNTRMKIASGVAKGLEYLEFYRDLPVMFGELKSSNILLDEGYHPKLSYFATVGNSSHVSTGKYEVTGKLTPECNVYGLGVVLLELISGRKAIDKSRSPETCHLVKWAQPILKDNSQFYRLVDPLLHGIYPEEWVNQTIDIAAMCLHEKADRRPAIREVVFALTNMESKCDRRGGLPCAFFYPSLGRKETGLEKERKKGDFERGNYSYAANIRKQGVSYVEMLKM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01844 379 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vimu7g01844 379 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Vimu7g01844 379 ProSiteProfiles Protein kinase domain profile. 59 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01844 379 FunFam receptor-like serine/threonine-protein kinase NCRK 33 134 - -
Vimu7g01844 379 Pfam Protein kinase domain 64 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01844 379 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Vimu7g01844 379 SUPERFAMILY Protein kinase-like (PK-like) 35 317 IPR011009 -
Vimu7g01844 379 PANTHER OS07G0668900 PROTEIN 37 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01844 Vimu-Chr7 16816725 16818693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01844 44 358 Glycoside Hydrolase AT3G07070 47.432 6.35e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu7g01844 Pkinase 6.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01844 - - var:108330065 573.548