Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01837 ATGGAGCGGTACGGCCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGGCGCCGACGCCGGCATCGAAGGTGACTCTATCTACATTATCTGTTATTCCCTTCACGATTCTCGATTTGCGTTGAATAATGCAGAGTGTGGTAATAATGGAAGTAGGTTTGATCTTGATTTCGCTAATAATGCAGAGTCCTCGTGGCAACACGGATTGGCAGCTGCCGAATCGTACCCTCTGCGACCCGATGAGGCTGATTGTATCTATTATCTGAGGACGGGATTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCCCGTGACCGTGCTGCGGTCATCGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGGCAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCATGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCGCTAAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAATTTGGTGCAACTTGTAAATTCCACCATCCCCAGCCTGCAGGTGTCCAAGTTATTGCACCATCACCGGTTCCCGCAGTTTCACATCTGCCTGTACCGGTACCTTCACCGGTATATCCAACTGTACAGCCCCAATCTGGTCCCTCGCAACAACAATATGGTGTACTTGTAGCAAGGCCTCCTATGCTACCTGGCTCAGTAGTTCAGGGTCCGTATGGACCTATGGTGGTGTCTCCTGCCATGGTCCCTTTTTCGGGTTGGGGTCCTTATCAGGTAGGTTCGGTTCACTATGCGCTGCTTACTCAAGTTATGTGCACATTTACTAAAGCTTTTAAGCACTTGGTGCAGGCTCCTGCAACAACCCCTGTAATGCCATCTAGCTCTGCTTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCGCTACCTTCGTCGGCAGCTACTTTTACTGGACCTTATCAGCCTTCTGGTTCCTCAGTTGGTCCTTCAGGTGCTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCTTGCAGATATCATCATCCACCAGACAAGGGTGCACCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCGCCTTGCACTCATTATACACAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTTAGCTATAGTCCATCTGCCTCCTCCCTGGCCGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATCGGTACTCTTGCTCCGTCATCTTCATCCTCAGAGTTGCGGCCTGAACTTGGTGCAGGAGTCAGTAAGGAGTCTGTTTCGTCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTTGGACCCATTTCTCATTCAGGCACCCAAGCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1641 0.5076 MERYGRASEGSQSDPSPEWTVAGADAGIEGDSIYIICYSLHDSRFALNNAECGNNGSRFDLDFANNAESSWQHGLAAAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVIAPSPVPAVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQVGSVHYALLTQVMCTFTKAFKHLVQAPATTPVMPSSSASNVGSTQLYGITPLPSSAATFTGPYQPSGSSVGPSGAIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGVSKESVSSRMSSMSTSTGSVGLTLSSVGPISHSGTQASAQSSSSSATTSATTSSTVSHTSS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01837 546 SUPERFAMILY CCCH zinc finger 370 395 IPR036855 GO:0046872
Vimu7g01837 546 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Vimu7g01837 546 MobiDBLite consensus disorder prediction 343 364 - -
Vimu7g01837 546 SUPERFAMILY CCCH zinc finger 133 158 IPR036855 GO:0046872
Vimu7g01837 546 Gene3D - 84 163 - -
Vimu7g01837 546 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g01837 546 SUPERFAMILY CCCH zinc finger 87 113 IPR036855 GO:0046872
Vimu7g01837 546 Gene3D - 164 213 - -
Vimu7g01837 546 MobiDBLite consensus disorder prediction 489 546 - -
Vimu7g01837 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 203 IPR000571 GO:0046872
Vimu7g01837 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 111 IPR000571 GO:0046872
Vimu7g01837 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 157 IPR000571 GO:0046872
Vimu7g01837 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 369 394 IPR000571 GO:0046872
Vimu7g01837 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Vimu7g01837 546 PANTHER PROTEIN PHOSPHATASE RELATED 72 475 - -
Vimu7g01837 546 SMART c3hfinal6 178 203 IPR000571 GO:0046872
Vimu7g01837 546 SMART c3hfinal6 84 111 IPR000571 GO:0046872
Vimu7g01837 546 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Vimu7g01837 546 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Vimu7g01837 546 SMART c3hfinal6 413 440 IPR000571 GO:0046872
Vimu7g01837 546 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
Vimu7g01837 546 MobiDBLite consensus disorder prediction 468 546 - -
Vimu7g01837 546 SUPERFAMILY CCCH zinc finger 177 204 IPR036855 GO:0046872
Vimu7g01837 546 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Vimu7g01837 546 FunFam CCCH type zinc finger protein 365 450 - -
Vimu7g01837 546 Gene3D - 366 444 - -
Vimu7g01837 546 ProSiteProfiles Zinc finger C3H1-type profile. 413 441 IPR000571 GO:0046872
Vimu7g01837 546 SUPERFAMILY CCCH zinc finger 417 443 IPR036855 GO:0046872
Vimu7g01837 546 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01837 Vimu-Chr7 16738127 16742174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01837 1 512 C2H2 Transcription Factor Family AT5G18550 49.808 7.01e-148 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu7g01837 zf-CCCH 1.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01837 - - gmx:100789405 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01837 7 16738127 16742174 Vimu2g00936 2 5881398 5892773 PCT