Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01836 ATGAAGAAGTTCTCAACCCTAAGAATCCTTCACCATCGTCATTGTCTTCTCAATCTCAATCCACCCTTCTCCGTCTGCTTCAATTTCAATTTCGCCACCGTTCCCCAATCTCAGTCCTTCGTTGTCTCCTATCTCGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCCCGCTACCTCCGTTTCAAGAGTTCTCAGAAGCCCGACTCCGTTCTAGCTTTCCTCTCCGAGCATGGCTTCTCCGTCTCTCAAATCCACACCGTCGTCAAACGGGAAAGTCGCATCCTCCGGTGCAACCCCGACAAAGTCCTCCTCCCCAAGTTCCAGTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAATCCACATGATCACCACCGGACCCCGATTCCTCTTAGCAAACCTCAACAGCCACATTGTCCCCGCCTATCACTTGGTCAGAAGTTTCGTCGACTCTGACAAGCAAGTCATCACCTGTCTCAGGCGAAACATCTCCTTCATTGCCAACAGTCGCATTATATCTCCCAACGTCCAACTTCTTATCGATAATGGCGTCAAACGCTCCAGCATCGCTATGATGTTCTCCATGTGGCCCTCTATCTTCAGCTCCTATGACCTGTCCCACACTGTTTGTGAATTGAAAGAAATGGGGTTTGACACTTCCAAAACCTCCTTCGCCCTGGCCATGATGGCCAAAAAGACTGTGAATAAAGCCAAGTGGGTTGAGAAGGTTGAGGTTTTTAAGAAGTGGGGGTGGTCGGAGGAGGATGTGCTTGTGGCGTTTAAGAAGAATCCTTATTGCATGTTGAACTCCCGTGAGAAGATTGATGCCATATTTAGCTTCTGGGTTGAGGTGTTAGGGTATAGCTCTTTGGAGATTGTCAAGTATCCTGGTATTATTCAGCTGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGGTTTCTTGAAAAGGAAGGATTGAGAAAAAAGGGTGCAAGCTATGTCAGGCCTCTACTCCGGACGGAGAATTTGTTTCTGAAGAAGTTTGTCTATGGTTTTGAAAAGCATTCTTCACAGTTGTTGAAGATATATGAGAAAAGTATGAAAGAAGGGAATACTAGAGAGGAATAG 1131 0.4819 MKKFSTLRILHHRHCLLNLNPPFSVCFNFNFATVPQSQSFVVSYLVSTCGFSPESALSASRYLRFKSSQKPDSVLAFLSEHGFSVSQIHTVVKRESRILRCNPDKVLLPKFQFLRSKGASSADIIHMITTGPRFLLANLNSHIVPAYHLVRSFVDSDKQVITCLRRNISFIANSRIISPNVQLLIDNGVKRSSIAMMFSMWPSIFSSYDLSHTVCELKEMGFDTSKTSFALAMMAKKTVNKAKWVEKVEVFKKWGWSEEDVLVAFKKNPYCMLNSREKIDAIFSFWVEVLGYSSLEIVKYPGIIQLSLPKRIVPRSLVLRFLEKEGLRKKGASYVRPLLRTENLFLKKFVYGFEKHSSQLLKIYEKSMKEGNTREE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01836 376 PANTHER CGI-12 PROTEIN-RELATED 38 351 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 SMART mt_12 195 223 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 Pfam mTERF 177 328 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 Pfam mTERF 75 175 IPR003690 GO:0003690|GO:0006355
Vimu7g01836 376 FunFam Mitochondrial transcription termination factor-like 139 357 - -
Vimu7g01836 376 Gene3D Transcription termination factor 3, mitochondrial 156 357 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01836 Vimu-Chr7 16722150 16723280 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu7g01836 mTERF 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01836 K15031 - gmx:102667698 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01836 7 16722150 16723280 Vimu7g01836 7 16722150 16723280 ECH