Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01835 ATGAAGAAGTTCTCAACCCTAAGAATCCTTCACCGTCGTCATTGTCTTCTCAATCTCAATCCACCCTTCTCCGTCTGCTTCAATTTCAATTTCGCCACCGTTCCCCAATCTCAGTCCTTCGTTGTCTCCTATCTCGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCCCGCTACCTCCGTTTCAAGAGTTCTCAGAAGCCCGACTCCGTTCTAGCTTTCCTCTCCGAGCATGGCTTCTCCGTCTCTCAAATCCACACCGTCGTCAAACGGGAAAGTCGCATCCTCCGGTGCAACCCCGACAAAGTCCTCCTCCCCAAGTTCCAGTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAATCCACATGATCACCACCGGACCCCGATTCCTCTTAGGCAGCCTCAACAACCACATTGTCCCCGCCTATCACTTGGTCAGAAGTTTCGTCGACTCTGACAAGCAAGTCATCACCTGTCTCAGGCGAAACTTCTCCTTCATTGCCGACAGTCGCGTATCTCCCAACGTCCAACTTCTCCTCGATAATGGCGTCAAACGCTCCAGCATCGCTATGATGTTCTGCATGCGGTCCTCTATCCTCGGCTCCTATAACCTGTCCCACACTATTTGTGAATTGAAAGAAATGGGGTTTGACACTTCCAAAACCACCTTCGCCGTGGCCCTGATGGCCAAAAAGACTGTGAATAAAGCCAAGTGGGTTGAGAAGGTTGAGGTTTTTAAGAAGTGGGGATGGTCGGAGGAGCATGTGCTTGAGGCGTTTAAGAAGCTTCCTTATTGCATGTTGAACTCCCAAGAGAAGATTGATGCCGTATTTAGCTTCTGGGTTGAGGTGTTAGGGTATAGCTCTTTGGAGCTTCTCAAGTATCCTGTTATTTTTCAGCTGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTATGGTTCTGAGGTTTCTTGAAAAGGAAGGATTGAGGAAAAAGGGTGCAAGCTATGCCATGCCTCAACTCCTGACGGAGAATGCGTTTCTGAAGAAGTTTGTCTATGGTTTTGAAAAGCATTCTTCTCAGTTGTTGAAGATATACGAGAAAAGTATGAACCAAGGGAATACTACTACAGAGGAGAGCAAAGTGAAGAAGAGGCCCCATAGAAACCGTCACCATCGTTCCCTTTCTTCGGTGGGAAACGACAAGCATTCTTCGGTGAAGCTTCAAGCGCCTTCGGAGGTGCCAGCGAGGTCCACTTTGATCAAGAGTTTGAAGAAAACGGCGTCGGATCATAGAAGTGTGAACCTCAAGCAGTTTGAAGCAACTGTTCAAGATTTTAAACCAAAAATGACTCAAAGTGAAAGGCCACGTCGTGAATCGGGGGAGCTCGCCGATTCTACTGAGGAGAAACACATGAATTATTAG 1416 0.4894 MKKFSTLRILHRRHCLLNLNPPFSVCFNFNFATVPQSQSFVVSYLVSTCGFSPESALSASRYLRFKSSQKPDSVLAFLSEHGFSVSQIHTVVKRESRILRCNPDKVLLPKFQFLRSKGASSADIIHMITTGPRFLLGSLNNHIVPAYHLVRSFVDSDKQVITCLRRNFSFIADSRVSPNVQLLLDNGVKRSSIAMMFCMRSSILGSYNLSHTICELKEMGFDTSKTTFAVALMAKKTVNKAKWVEKVEVFKKWGWSEEHVLEAFKKLPYCMLNSQEKIDAVFSFWVEVLGYSSLELLKYPVIFQLSLPKRIVPRSMVLRFLEKEGLRKKGASYAMPQLLTENAFLKKFVYGFEKHSSQLLKIYEKSMNQGNTTTEESKVKKRPHRNRHHRSLSSVGNDKHSSVKLQAPSEVPARSTLIKSLKKTASDHRSVNLKQFEATVQDFKPKMTQSERPRRESGELADSTEEKHMNY 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01835 471 FunFam Mitochondrial transcription termination factor-like 139 356 - -
Vimu7g01835 471 MobiDBLite consensus disorder prediction 431 446 - -
Vimu7g01835 471 Pfam mTERF 175 332 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 Pfam mTERF 75 284 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 PANTHER CGI-12 PROTEIN-RELATED 38 350 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 Gene3D Transcription termination factor 3, mitochondrial 138 356 IPR038538 -
Vimu7g01835 471 MobiDBLite consensus disorder prediction 447 471 - -
Vimu7g01835 471 MobiDBLite consensus disorder prediction 370 471 - -
Vimu7g01835 471 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 SMART mt_12 194 222 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 SMART mt_12 7 52 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Vimu7g01835 471 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01835 Vimu-Chr7 16716491 16718874 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu7g01835 mTERF 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01835 K15031 - gmx:102667698 358.992