Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01834 ATGAAGAAGTTCTCAACCCTAAGAATCCTTCACCATAGTCATTCTCTTCTCAATCTTAATCTCAATCTCAATCCATCCTTTTCCGTCTGCTTCAATTTCAATTTCGCCACAGTTCCCCAATCTCAGTCCTTCGTTGTCTCCTACCTTGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCCCGCTACCTCCGTTTCAAGAGTTCTCAGAAGCCCGACTCCGTCCTAGCTTTCCTCTCCGAGCATGGCTTCTCCGTCTCTCAAATCCACACCATCGTCAAACGGGAAAGTCGCATCCTCCTCTGCAACCCCGACAAAGTTCTCCTCCCAAAGTTCCTGTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAATCCGCATGATCACCGCCGGACCCCGATTCCTCTTAGCCAGCCTCAACAACCACATTGTCCCCGCCTATCACTTGGTCAGAAGTTTCGTCGACTCTGACAAGCAAGTCATCACCTGTCTCAGGCGAAACATCTCCTTCATTGCCCACAGTAGCATATCTCCCAACGTCCAACTTCTTCTCGATAATGGCGTCAAACGCTCCAGTATCGGTATGATGCTCTCCACGTGGCCCTCTATCCTCTGCTCCCATAACCTGTCCCACACTATTTGTGAATTGAAAGAAATGGGGTTTGACACTTCCAAAACCATCTTCGCCGTGGCCATGATAGCCAAAAGGACTGTGAATAAAGCCAAGTGGGTTGAGAAGGTTGAGGTTTTTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGTGACGTTTAAGAAGCATCCTCGTTGCATGATGAGCTCCCGTGAGAAGATTGATGCCGTATTTAGCTTCTTGGTTGAGGTGTTAGGGTATAGCTCTTTGGAGCTTCTCAAGTATCCTGTTATTATTCAGATGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGGTTTCTTGAAAAGGAAGGATTGAGAAAAAAGGGTGCAAGCTATGTCACGCCTCTACTCCCGACGGAGAATATGTTTCTGAAGAAGTTTGTCTATAGTTTTGAAAAGCATTCTTCTAAGTTGTTGAAGATATATGAGAAAAGTATGAAGGAAGGGAATAATAGAGAGTAG 1137 0.4785 MKKFSTLRILHHSHSLLNLNLNLNPSFSVCFNFNFATVPQSQSFVVSYLVSTCGFSPESALSASRYLRFKSSQKPDSVLAFLSEHGFSVSQIHTIVKRESRILLCNPDKVLLPKFLFLRSKGASSADIIRMITAGPRFLLASLNNHIVPAYHLVRSFVDSDKQVITCLRRNISFIAHSSISPNVQLLLDNGVKRSSIGMMLSTWPSILCSHNLSHTICELKEMGFDTSKTIFAVAMIAKRTVNKAKWVEKVEVFKKWGWSEEHVLVTFKKHPRCMMSSREKIDAVFSFLVEVLGYSSLELLKYPVIIQMSLPKRIVPRSLVLRFLEKEGLRKKGASYVTPLLPTENMFLKKFVYSFEKHSSKLLKIYEKSMKEGNNRE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01834 378 Gene3D Transcription termination factor 3, mitochondrial 160 363 IPR038538 -
Vimu7g01834 378 FunFam Mitochondrial transcription termination factor-like 143 360 - -
Vimu7g01834 378 PANTHER CGI-12 PROTEIN-RELATED 42 355 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 Pfam mTERF 180 331 IPR003690 GO:0003690|GO:0006355
Vimu7g01834 378 Pfam mTERF 79 179 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01834 Vimu-Chr7 16712018 16713154 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu7g01834 mTERF 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01834 K15031 - gmx:102667698 360.918