Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01832 ATGTTCAGTCCAAGCGTGGATTCTGCGAGGGATGCTGGTGGTGTGGCAGCGGCTGTGCTAATTCCCATGCGGTTTGTGTGGCCATACGGGGGAAGAAGTGTGTATCTAAGCGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAGGGCTGCCCAACTGTTTTTCAAGTCATTCATAGCTTGGCCCCTGGTTATCATCAGTACAAGTTTTATGTTGATGGGGAATGGCGGCATGATGAGCATCAACCCTGTTTATCCGGAGAATATGGGATAGTTAATACTGTTTTTTTGGCTACTGATCCTTTTGTACCTCTTTTAACTCCAGACACGGTTTCTGGATCTAACATGGATGTGGATAACGAGGCTTTTCGACGCATGGCCCGATTGACAGATGGTACATTAAGTAATGTGTTGTTACCAAGGATATCAGATGCTGATGTACAGACCTCTCGTCAGCGTATTTCTTCATTCCTATCTTCGTGCACAGCATATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTCGATCTGCCTGTGAAACAGGCATTCCACATACTGCATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACATCTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCCTTGGATTTTATTTTAATTTTAAGAGAGCTTGGAAATCATGGGTCCAATCTGACCGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAATGGACAGCATTTACACAAGGTTTTATCCGTGCAGGGCCATATGATAATTTGAAAGAGATTGCTCTGAAGATCCTGCAAAATGGAATTTCAACAGTTCCTATTATTCATTCATCTTCTGAAGATGGCTCATTTCCCCAGCTGCTACATCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTGCCAATACTTCAACTTCCAATCTGTGCAATCCCTGTGGGGACGTGGGTGCCCAAAATTGGGGAGCCAAATTGCCAGCCTCTAGCAATGTTGAGACCAAATGCTTCGCTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATTCCAATAGTTGATGACAGCGACTCATTGCTGGATATATATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAACTTATACACATATTAATCTTGATGAAATGACGGTTCATCAGGCATTGCAACTAGGGCAAGATTTTTACAGTTCTTTCGAACCAAGAAGTCAAAGATGTGTGAGGCGGCTAGTCATTGTGGAAGCTGGCAGCAAGCGGGTAGAAGGCATCATATCACTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1383 0.436 MFSPSVDSARDAGGVAAAVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFYVDGEWRHDEHQPCLSGEYGIVNTVFLATDPFVPLLTPDTVSGSNMDVDNEAFRRMARLTDGTLSNVLLPRISDADVQTSRQRISSFLSSCTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPMAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFTQGFIRAGPYDNLKEIALKILQNGISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGEPNCQPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMTVHQALQLGQDFYSSFEPRSQRCVRRLVIVEAGSKRVEGIISLSDIFKFFLG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01832 460 Gene3D Immunoglobulins 18 101 IPR013783 -
Vimu7g01832 460 CDD E_set_AMPKbeta_like_N 22 100 - -
Vimu7g01832 460 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 152 458 - -
Vimu7g01832 460 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Vimu7g01832 460 Pfam CBS domain 348 392 IPR000644 -
Vimu7g01832 460 Pfam CBS domain 429 459 IPR000644 -
Vimu7g01832 460 SMART cbs_1 348 396 IPR000644 -
Vimu7g01832 460 SMART cbs_1 176 225 IPR000644 -
Vimu7g01832 460 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Vimu7g01832 460 Gene3D - 321 426 IPR046342 -
Vimu7g01832 460 Gene3D - 427 459 IPR046342 -
Vimu7g01832 460 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Vimu7g01832 460 SUPERFAMILY E set domains 21 102 IPR014756 -
Vimu7g01832 460 Gene3D - 147 320 IPR046342 -
Vimu7g01832 460 ProSiteProfiles CBS domain profile. 342 401 IPR000644 -
Vimu7g01832 460 SUPERFAMILY CBS-domain pair 156 317 IPR046342 -
Vimu7g01832 460 SUPERFAMILY CBS-domain pair 347 459 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01832 Vimu-Chr7 16680133 16686299 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01832 - - gmx:100810976 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01832 7 16680133 16686299 Vimu7g01832 7 16680133 16686299 ECH
Vimu7g01832 7 16680133 16686299 Vimu10g00224 10 1366918 1375281 PCT