Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01827 ATGTTGTCTGTTGGAGTTCAATTCCTTCCTTTCTTCCTTCCAATGATGGTGGACAATGTCGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATCAGGGAACAAGACCGTCTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCGGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGAAAGGAGAGGAGGAAGACTGTGAACGGAGATGATATATGCTGGGCCTTAGGCTCCCTTGGTTTTGATGACTATGCAGACCCATTGAGAAGGTATTTGCACAGATATAGAGAACTAGAACTAGATAGATCAGCCATCCAAGAGAGAGGAAATAGCCCCTCTAAAGACAAGGATGTTGAATTCTGA 441 0.4422 MLSVGVQFLPFFLPMMVDNVGGSSSNPENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRYLHRYRELELDRSAIQERGNSPSKDKDVEF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01827 146 FunFam Nuclear transcription factor Y subunit B-3 27 145 - -
Vimu7g01827 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Vimu7g01827 146 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu7g01827 146 Coils Coil 114 134 - -
Vimu7g01827 146 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Vimu7g01827 146 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Vimu7g01827 146 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Vimu7g01827 146 Gene3D Histone, subunit A 26 145 IPR009072 GO:0046982
Vimu7g01827 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu7g01827 146 SUPERFAMILY Histone-fold 35 139 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01827 Vimu-Chr7 16620345 16621141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01827 32 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.222 2.61e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu7g01827 CBFD_NFYB_HMF 5.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01827 K08065 - gmx:100786046 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01827 7 16620345 16621141 Vimu10g00220 10 1318686 1319054 PCT