Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01826 ATGTTCAAAATTTACCGCCGCACAAGCCTTGGTTGTGCCAAGTTTTTCGAATTGACAACCCTAAAATGGAACCCTCTTTTCCAGTTCTGCAGGGCCACCTCCACCTCCAATTCATCCTCTTTCGTGGTCTCGTACCTCGTCAACAACTGTGCCTTCTCCCAAAAAACCGCTCTCAAAGCTTCCCGCAATCTTCATTTTTCGAAACCCCAAAACCCTGATTCTGTTCTCTCCTTCTTCCGAAACCACGCCTTCTCCAACTCTCACATATCTCATATCCTCCAAAGAGTGCCCCAGTTACTTTCATACAACACCCAAAAGGTGCTGTTGCCAAAGTTTGAATTTTTCCGTTCAAAGGGTGCTTCGTCCCTTGACATTATTCACGCCGTTACCGCCTGCCCTTATTTTCTCCGACGAAGCTTGGAGAATCATATAATCCCAACATATGACTTTATTAGAGGGTTCCTTCCACCCTTGTTTACGGACAAGCAAATCATTGATTTTCTGATTCGCAATCCTTGGTTACTTTATGAAAGCCGTGGGGTAGTTAACCTCAAATTGTTGCTTGATAGTGGAGTTCCCGGTTCAAATATTGTTAAGTTGCACCGGAGATGGTGTCGTCTACTCTGCTCTGGCGACATTTCAAAGACAGTTCAGGAGTTGAAGCAAATGGGCTTCGATGCTTCGCTTTCAACATTCTGCATAGCGTTGGTTGCCAAAAGAAACCTAGGCGAAAGCAAATGGGCCGAGAAGATTGACACTTATAAGAGGTGGGGTTGGTCCCAAGAACAAGTTCTTCTAGCATTTAGGAGGCAGCCTTATTGTATGCTGTCATCCTGTGATAAAATTAATGCCGTGATGAGTTATTGGGTGGAGCAGGCAGGCTTCAATTCTGTGGACCTTGTCAAAACTCCTGGAATTATCTTACTTAGTCTCCGAAAAAGGATTGCTCCGAGGGCTTGTGTCTTGCAGTTTCTTGTCTCAAAAGGTCTGCTACGGAAGGATGCAAGCTTAACGACACCATTTGTTCTGACTGAGAAGTTGTTCCTGGAAAACTACGTAAAACGTTTTAGGGAGGATTCTTCTCATCTGTTAAAGCTGCACACAGAACATGAGTCTTGGAAATGA 1125 0.4453 MFKIYRRTSLGCAKFFELTTLKWNPLFQFCRATSTSNSSSFVVSYLVNNCAFSQKTALKASRNLHFSKPQNPDSVLSFFRNHAFSNSHISHILQRVPQLLSYNTQKVLLPKFEFFRSKGASSLDIIHAVTACPYFLRRSLENHIIPTYDFIRGFLPPLFTDKQIIDFLIRNPWLLYESRGVVNLKLLLDSGVPGSNIVKLHRRWCRLLCSGDISKTVQELKQMGFDASLSTFCIALVAKRNLGESKWAEKIDTYKRWGWSQEQVLLAFRRQPYCMLSSCDKINAVMSYWVEQAGFNSVDLVKTPGIILLSLRKRIAPRACVLQFLVSKGLLRKDASLTTPFVLTEKLFLENYVKRFREDSSHLLKLHTEHESWK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01826 374 Gene3D Transcription termination factor 3, mitochondrial 158 365 IPR038538 -
Vimu7g01826 374 FunFam Mitochondrial transcription termination factor-like 140 360 - -
Vimu7g01826 374 PANTHER CGI-12 PROTEIN-RELATED 38 355 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 Pfam mTERF 76 227 IPR003690 GO:0003690|GO:0006355
Vimu7g01826 374 Pfam mTERF 241 348 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01826 Vimu-Chr7 16610264 16611388 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu7g01826 mTERF 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01826 K15031 - gmx:102667698 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01826 7 16610264 16611388 Vimu7g01826 7 16610264 16611388 ECH
Vimu7g01826 7 16610264 16611388 Vimu10g00216 10 1303689 1304867 PCT