Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01825 ATGAGGAATTACGAGAGTGTTGTCGAGGGTGCCAACGAGGATGAACTTGGCGTTGGGGGAAAACTTGACAAAGGAGACGGGAGGGTTCTCGTCGTCGATAAGGGTCTTGACGCAGTGGCCAGTGGAGGCGTCCCAGATTCGGCAGAGGCCGTCGTAGCTGCTGGAGACGATGAGGGTGCCGTCGCGGTTGAAGTCCACGGCGGTGACGGGGTCGGAGTGGGCGGGGAGGACCTTGAGACACTTGCCGGACTTGACATCCCAAACCCTAACGGTCTCGTCGAAGGAGCCGGAGACGATGACGTTAGACTGAGGGTTGAAATTGACGCAGAAGACGAAATTAGTGTGGCCCTGCAGCGTCTTTATGAGGGACCCCGTCGGCACGTCCCAGAGGCGGAGGGTCTTGTCGTCGGAGGCGGAGACGAGGAAGCGGGAGTCGGAGGAGAAGGCGAGGTCGGACACGCCCTGCTCGTGCCCCGAGTACTCCTGCATCGGGGAGAGAGAGAGGCTGTCGGAGTCGGAGTCGGAGTTCGTGAAGCCGTAGGTTCGGAGAGTCTTGTCGGCGGAGGAGGAGGCGAGGAGGCGGCCGTTGGAGGAGAATTTGACGGCGGAGATGGCGCGTTTGTGGCCGTTTGTAGGGTTGACGGTGGTGAAAGACACAAGTCCGAACTCTTGCGGCGGAGGCGGTGGATCTACCTCCATTCTCATCCCATGAACACCATTCTCCGCCACCGCCTCAGGCTAAGTCCGACACGTGTTCTTTATTGCCTCCCCAAATTCCTTTATTCCCAACCCTTTCACTTTTTCTCAACAACCACTTCTGAGCCCTGCGCCTTCACCTTATCCTATCTCACCAACACCTGCGGCTTCTCGTACGAGGTCGCACTTAAACTATCCAAACGACTTCGTTTCCAAACCGCCGAAAAACCCGATTCCGTCTTGTCTTTCTTCCGAACCCACGGTTTCTCCAGCTCCCAGATCTGCCGCATCTTCTACCAAGCCCCCGATCTTTTGGTATGCGACCCCACCAAAAGGCTTCTCCCTAAATTCCAATTCTTAGCCTCTAAAGGCGCTTCTCCCTCCGACACCATTCTAATCGTCTCCAAGACCGCCCGCTTCCTTCGTTACGGTCTCAACAGCCATATCATTCCCATCTTCGAACTGATCCGAACGTTCTTGCCCTCCGACCTAAAAGCCCTTGCTGTTTTCATCGCCTGTCCCAATTTCATCGGAGACTGTCGTGTTGCCTCCAACGTTCAGATGTTGCTCGACACCGGAGTAACGCACACTGGTATTCGCTACTTACTCTGCTCTCGGCCTTCGGTTCTGTGCTCCGACCTTAGACCCGCTATTGAGGAAGTGAAGTTGTTGGGGTTTGACCCTTCGAAGCTGAGCTTCACTTTGGCCCTTCTGGCTAAAAGGGCTGTTTCGAAACCTCTTTGGAATGCCAAAGTCGAAGTCTTGAAGAAATGGGGTTGGTCCGAGGATGATATTTGTGTTGCTTTTAGGAACCAGCCTAATGTTATGCTGCGCTCCATGGAAAAACTTAATGCAGTGATGGAGTTTTGGGTTGGTCAGCTTGGTTGGGATCACTCCGTGCTTATTTCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTGGCACCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGATTGGTGAAGAAAAGTGCTAGCTTGGCCACACCTTTTGCTGTGTCTGATGAACGGTTTCTTCAAAAGTACGTAAAACGTTCTGAGGAGGAAACTCCCAGGTTACTAGAGCTATATCAGGCGGCACAGGAAACATGCTAG 1824 0.5384 MRNYESVVEGANEDELGVGGKLDKGDGRVLVVDKGLDAVASGGVPDSAEAVVAAGDDEGAVAVEVHGGDGVGVGGEDLETLAGLDIPNPNGLVEGAGDDDVRLRVEIDAEDEISVALQRLYEGPRRHVPEAEGLVVGGGDEEAGVGGEGEVGHALLVPRVLLHRGEREAVGVGVGVREAVGSESLVGGGGGEEAAVGGEFDGGDGAFVAVCRVDGGERHKSELLRRRRWIYLHSHPMNTILRHRLRLSPTRVLYCLPKFLYSQPFHFFSTTTSEPCAFTLSYLTNTCGFSYEVALKLSKRLRFQTAEKPDSVLSFFRTHGFSSSQICRIFYQAPDLLVCDPTKRLLPKFQFLASKGASPSDTILIVSKTARFLRYGLNSHIIPIFELIRTFLPSDLKALAVFIACPNFIGDCRVASNVQMLLDTGVTHTGIRYLLCSRPSVLCSDLRPAIEEVKLLGFDPSKLSFTLALLAKRAVSKPLWNAKVEVLKKWGWSEDDICVAFRNQPNVMLRSMEKLNAVMEFWVGQLGWDHSVLISSPTLFSYSLEKRVAPRALVVQYLLSKGLVKKSASLATPFAVSDERFLQKYVKRSEEETPRLLELYQAAQETC 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01825 607 SMART mt_12 327 358 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 SMART mt_12 498 529 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 SMART mt_12 530 564 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 SMART mt_12 432 459 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 Pfam mTERF 481 582 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 Pfam mTERF 313 450 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 PANTHER CGI-12 PROTEIN-RELATED 278 589 IPR003690 GO:0003690|GO:0006355
Vimu7g01825 607 Gene3D Transcription termination factor 3, mitochondrial 410 597 IPR038538 -
Vimu7g01825 607 FunFam Mitochondrial transcription termination factor-like 377 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01825 Vimu-Chr7 16601438 16604852 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu7g01825 mTERF 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01825 K15031 - gmx:102666739 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01825 7 16601438 16604852 Vimu7g01825 7 16601438 16604852 ECH
Vimu7g01825 7 16601438 16604852 Vimu10g00214 10 1293450 1294605 PCT