Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01810 GTATATATATGTGTGTGTTGTGTGTGTTTTCCTTTCAGTATATGTATACCTGTGGTACTGATACTATTGAGAATGGATTTCTTAGCGCAGGGTATAATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGCAACAGTGATAGAGGTATTCCCTGTGAGGTTGCCAGTGGCTGCAAAATCCTTCCCGGAGTACGTAGAACCAGTAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCGAATGCTACATTAGCCAACACAAACATATGCAATGGTAAAATAGGTGAAGAAATCCTTCCAAGTTGGGACTCACCTAATTCATTTCGTAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCATCTTCCCTCCCAAGTAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTACAAGTGACATCCTCGAATATGACTCTTGCACGTTAAAATCAATGAGCGATCCTTCCAGAAGTGAAGGTTTTCTTAATGTTAAGGAAGTTCAAGTAGCAGGAGGAGCTGCCGGTGAAGACAGAGTTCAAGCAGTTTGTTCAGAAGAAAATGGGTGGCTATTCTGTGCAATTTATGATGGCTTTAATGGAAGAGATGCAGCCGATTTTCTGGCTGGTACCCTGTATGACACCATCATATCATACTTTAATAAGTTAATCGAGGAATTGGAGCCAGGTTCCATCAGAGCTTATAATGATGGGGGCTTGGATGAATCCCTGCAATGTAAGTTGAATGACAGTCTTATTTATCACGAAGATCAATCTATGGCAAGATTTAAAGGAATAAATGATTCTAATCATGGATGTTATGCAAAGTGTAGCCTATCTACTAAGTCAGAACTATCATGTGATCCATTTTCACAAGGGGTACTTGATATCCTTGAACGTGCTATTAGTCAGGCAGAGAATGATTTCCTGTACATGGTGGAGCGGGAAATGGAGGAACGTCCTGATCTAGTTTCTATTGGATCTTGTGTTTTACTAGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTTGGTGACAGCAGAGCAGTTTTGGCAACCTGCATTACAGGTTGCCGAATGGATAAGAGTGAGAGACTGAAAGCTATACAGCTTACAGATAATCACACTGTTGATAATGAAGTTGAAAGAATTAGACTTCTGGCCGAACATCCCGATGATCCTAGGATCGTTATAGCAGGAAAAGTGAAAGGGAAACTCAAGGTTACTCGCGCATTTGGAGTTGGCTACTTGAAAAAGAAAAATTTAAATGATGCTTTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATACATATCCACTCAACCATCACTGAATGTCCATAGAATCTCAAGCTCCGATCAATTTGTGATAGTAGGGAGTGATGGTTTATTTGATTTCTTCAGCAACGATGAGGCAGTAAAGCTTGTAGAGTCTTATATCTGGAGCACCCCTTTTGGTGATCCAGCAAAGTTTCTGATAGAGCAGCTTGTGGCTAGAGCAGCTGTTTCTGCCGGTTTAAGCATGGAAGAGTTGATGAACATTCCAGCTGGGAGGAGAAGGAAGTACCATGACGATGTGACCGTAATTGTGATCATGCTTGGGATGAATCAACGGACTTCAAAGGCATCAACTTGCATTTGA 1671 0.4099 VYICVCCVCFPFSICIPVVLILLRMDFLAQGIMLSPEGELKISFGYKCNSDRGIPCEVASGCKILPGVRRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPSSLSYLSCSPSTTSDILEYDSCTLKSMSDPSRSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFNKLIEELEPGSIRAYNDGGLDESLQCKLNDSLIYHEDQSMARFKGINDSNHGCYAKCSLSTKSELSCDPFSQGVLDILERAISQAENDFLYMVEREMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCITGCRMDKSERLKAIQLTDNHTVDNEVERIRLLAEHPDDPRIVIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYISTQPSLNVHRISSSDQFVIVGSDGLFDFFSNDEAVKLVESYIWSTPFGDPAKFLIEQLVARAAVSAGLSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01810 556 SMART PP2C_4 159 541 IPR001932 -
Vimu7g01810 556 Pfam Protein phosphatase 2C 315 498 IPR001932 -
Vimu7g01810 556 FunFam Probable protein phosphatase 2C 40 149 552 - -
Vimu7g01810 556 PANTHER PROTEIN PHOSPHATASE 2C 174 541 IPR015655 GO:0004722|GO:0006470
Vimu7g01810 556 Gene3D - 137 552 IPR036457 -
Vimu7g01810 556 ProSiteProfiles PPM-type phosphatase domain profile. 168 543 IPR001932 -
Vimu7g01810 556 CDD PP2Cc 181 541 IPR001932 -
Vimu7g01810 556 SUPERFAMILY PP2C-like 182 544 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01810 Vimu-Chr7 16513138 16515087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01810 36 556 PP2C-type Phosphatase Gene Family AT3G16560 61.860 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01810 - - vun:114178627 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01810 7 16513138 16515087 Vimu10g00204 10 1225912 1228323 PCT