Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01778 ATGCTATTCGCCATCGTCGTTCTCTTCGTCATCATCATCATAATGCTTTGCCTCCACGTTTACGTCCGCTGCACCCTCCTTCGAGCTCGCCGCCGGCAACAACTTCCCCGAAGAAGCAACCCCCCGCATGCTCTCACCTCGAGCGGCCTCCACCCCTCCGTCATCTCGACGATCCCGGTCTTCACCTTCTCCGATTCCATCCAAAAATCGGAATGCGCGGTGTGCTTGTCCGAGTTCGAGAACGGGGAAACGGGTCGGGTCTTACCCAAATGCAACCATAGTTTCCATACTGAGTGCATCGACATGTGGTTCCAGTCCCACACCACTTGTCCGCTTTGCAGGGCGCCTGTGGAGGCCATTTCCGAGCAAGAAACTCGATCTGAGGTGGCTGTTGTTGTGTGTGAACCTGAAACGGTTGGGGAAGAGGTGGAGCGGTCTACACCGGTTGGTTCTTCTTCTTCTGCATTGCGTAACGAGAGCTTGGGGAGTGAGACGGAGTCTTCATTTCTTTCTCCGGTGAGTCGGATAGTGTCGTTGAAGAGAATTCTGAGCAGAGAGAAAAAGGGAAGCGTATCGGGGTGTGTGGTGGGAGGATGCAGCTCCACAACCACCGAGTTAGATGCAGAACGGGAATAG 636 0.5456 MLFAIVVLFVIIIIMLCLHVYVRCTLLRARRRQQLPRRSNPPHALTSSGLHPSVISTIPVFTFSDSIQKSECAVCLSEFENGETGRVLPKCNHSFHTECIDMWFQSHTTCPLCRAPVEAISEQETRSEVAVVVCEPETVGEEVERSTPVGSSSSALRNESLGSETESSFLSPVSRIVSLKRILSREKKGSVSGCVVGGCSSTTTELDAERE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01778 211 MobiDBLite consensus disorder prediction 142 161 - -
Vimu7g01778 211 SMART ring_2 72 113 IPR001841 -
Vimu7g01778 211 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Vimu7g01778 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 120 IPR013083 -
Vimu7g01778 211 SUPERFAMILY RING/U-box 60 120 - -
Vimu7g01778 211 CDD RING-H2_EL5-like 71 114 - -
Vimu7g01778 211 FunFam E3 ubiquitin-protein ligase ATL6 38 120 - -
Vimu7g01778 211 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 122 IPR044675 -
Vimu7g01778 211 MobiDBLite consensus disorder prediction 145 161 - -
Vimu7g01778 211 Pfam Ring finger domain 71 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01778 Vimu-Chr7 16306465 16307133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01778 1 210 Rapid Response to Elicitors AT3G16720 41.264 2.14e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01778 - - var:108338887 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01778 7 16306465 16307133 Vimu7g01778 7 16306465 16307133 ECH
Vimu7g01778 7 16306465 16307133 Vimu10g00171 10 1020171 1021004 PCT