Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01777 ATGGCGAATGGATTCGACAGTGTTCATGAGAGGAAGAAGAAGCTCGCAGTTTTGAGTGTCTCTTCCGTCCTCCTGATCGCGATGGTTGCCGCGGTGGCCGTTGGCATAAATGACGACGTCCATGGCCAACACACGGAAGAAGAAGGCGAAGGCAGCATCGCGAAATCTCAGAGGAGCGCCAACATGATATGTCAATCGGCCGAATACAAAGAAACCTGCCACAAGAGTCTCGCCAATGCTTCCGACAATAACACCGACCTGAAGCAACTTATCATCACCGCCTTCAATGCCACCTCTCAGGAGATTCACAGCAAAATTGAAAACTCAACGCTGTACCACGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGACATTTGCAAGGAAGTACTAGGTTACGCTGTGGATGATATAAACGAATCCGCTGCGACTTTGGAGAAGTTTGACCTGAACAAGATGGACGATTACGCCTATGACCTCAAGGTTTGGATCTCGGGTACCATTGCCCACCAGCAAACATGCTTGGACGGGTTCGAGAACACGACCACCGAGGCTGGAAAGACAATAGCTAAGGTTCTGAACACGTCATTGGAGATGAGCAGAAACGCGCTGGACATAGTGAACGGTGTGTCGTCTCTCTTCAAGGGTCTGAACTTGACCTCCTTCGGCTCCAGTCACAGGAAGCTTCTCGCCGAAGAAACTTTGGTTGATGGGTTCCCATCGTGGGTGAGTGAAGGGCAGAGAAAAATTCTGGAATCTACTGATATCAAACCAAATGTGGTGGTGGCTCAGGATGGGAGTGGACAGGTGACCACTATCCACGAGGCTCTCAAACTGGTGCCTAAGAAGAACAAGACGCCTTTTGTGATTTACATCAAGGCCGGTGTCTACAGGGAGTATGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGTGATGGCCCCACCCTCACCAGAATCACCGGCAATAAAAACTACGTCGATGGTTTCCAAACCTACAACACCGCAACCGTCGGTGTGAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACACGGCTGGAGCGGAGAAGCACCAAGCTGTGGCTCTGAGGGTAACAGCTGACAAGGCAGTGTTCTACAACTGTCACATGGACGGCTACCAAGACACCCTCTACACCCAGTCCCAGCGCCAGTTTTACCGCGACTGCATTGTCACCGGCACCATCGACTTTGTCTTCGGGGACGCCATCGCCGTTTTCCAGAACTGCAAGTTCATCGCGAGGATGCCAATGGAGAACCAGCAGTGCATGGTGACAGCCGGCGGAAGGACCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATATTCACCGGCGAGGCGGAGCTGAAAGCCGTGACTCCGAAGATCGCGTACCTCGGGAGGCCCTGGAGGCTTTTCTCGAAGGTGGTGATAATGGACTCCGAAATCGACGACATCTTCGCTCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAAAGATACCTGCACCTACTACGAGTTCAACAACAGGGGTCCCGGTGCGGACACCACCGGAAGAATCACCTGGCCAGGGTTTAAGGTGATTACCCCTGTTGAGGCTGCCGATTACTACCCCGGGAAGTTTTTTGAGCTGGCTAACTCCACTGACCGTGACGCTTGGATCCTTGACTCTGGCGTACCCTATTCCCTTGGCCCTCTTCCACCATCCACCGCCCAGCCCGTCGTAGTTTAA 1761 0.5292 MANGFDSVHERKKKLAVLSVSSVLLIAMVAAVAVGINDDVHGQHTEEEGEGSIAKSQRSANMICQSAEYKETCHKSLANASDNNTDLKQLIITAFNATSQEIHSKIENSTLYHELATDNMTKQAMDICKEVLGYAVDDINESAATLEKFDLNKMDDYAYDLKVWISGTIAHQQTCLDGFENTTTEAGKTIAKVLNTSLEMSRNALDIVNGVSSLFKGLNLTSFGSSHRKLLAEETLVDGFPSWVSEGQRKILESTDIKPNVVVAQDGSGQVTTIHEALKLVPKKNKTPFVIYIKAGVYREYVNLNKHMSFVTMIGDGPTLTRITGNKNYVDGFQTYNTATVGVNAANFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCIVTGTIDFVFGDAIAVFQNCKFIARMPMENQQCMVTAGGRTKIDSPSALVFQSCIFTGEAELKAVTPKIAYLGRPWRLFSKVVIMDSEIDDIFAPEGYMPWMGSAFKDTCTYYEFNNRGPGADTTGRITWPGFKVITPVEAADYYPGKFFELANSTDRDAWILDSGVPYSLGPLPPSTAQPVVV 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01777 586 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Vimu7g01777 586 CDD PMEI-like_3 63 213 - -
Vimu7g01777 586 FunFam Pectinesterase 56 212 - -
Vimu7g01777 586 Pfam Plant invertase/pectin methylesterase inhibitor 62 207 IPR006501 GO:0004857
Vimu7g01777 586 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
Vimu7g01777 586 SUPERFAMILY Pectin lyase-like 257 552 IPR011050 -
Vimu7g01777 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Vimu7g01777 586 SMART PMEI_2 55 207 IPR006501 GO:0004857
Vimu7g01777 586 FunFam Pectinesterase 4 257 575 - -
Vimu7g01777 586 PANTHER PECTINESTERASE 24 564 - -
Vimu7g01777 586 Gene3D - 254 574 IPR012334 -
Vimu7g01777 586 NCBIfam pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857
Vimu7g01777 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 210 IPR035513 -
Vimu7g01777 586 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01777 Vimu-Chr7 16298053 16300260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01777 1 576 Carbohydrate Esterase AT3G05610 44.845 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01777 K01051 - gmx:100820068 926.391