Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01774 ATGCAGATATTCGTCAAAACTTTGACCGGCAAAACCATCACCCTTGAGGTTGAATCCTCCGACACCATTGATAACGTGAAAGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCGGATTACAACATCCAAAAGGAATCCACTCTGCACCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATAACCTTAGAGGTGGAGAGTTCAGATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTACAACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTCTGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAACATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACATTCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTTCGTGGTGGCTTCTAA 945 0.4646 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01774 314 ProSitePatterns Ubiquitin domain signature. 264 289 IPR019954 -
Vimu7g01774 314 CDD Ubl_ubiquitin 87 161 - -
Vimu7g01774 314 ProSitePatterns Ubiquitin domain signature. 112 137 IPR019954 -
Vimu7g01774 314 Gene3D - 238 314 - -
Vimu7g01774 314 Gene3D - 86 161 - -
Vimu7g01774 314 Gene3D - 1 78 - -
Vimu7g01774 314 Gene3D - 162 237 - -
Vimu7g01774 314 ProSiteProfiles Ubiquitin domain profile. 77 161 IPR000626 GO:0005515
Vimu7g01774 314 CDD Ubl_ubiquitin 1 76 - -
Vimu7g01774 314 CDD Ubl_ubiquitin 238 313 - -
Vimu7g01774 314 ProSiteProfiles Ubiquitin domain profile. 238 313 IPR000626 GO:0005515
Vimu7g01774 314 Pfam Ubiquitin family 164 235 IPR000626 GO:0005515
Vimu7g01774 314 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vimu7g01774 314 Pfam Ubiquitin family 88 159 IPR000626 GO:0005515
Vimu7g01774 314 Pfam Ubiquitin family 240 311 IPR000626 GO:0005515
Vimu7g01774 314 SUPERFAMILY Ubiquitin-like 237 313 IPR029071 -
Vimu7g01774 314 ProSiteProfiles Ubiquitin domain profile. 162 237 IPR000626 GO:0005515
Vimu7g01774 314 FunFam Polyubiquitin 3 238 313 - -
Vimu7g01774 314 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vimu7g01774 314 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vimu7g01774 314 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vimu7g01774 314 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vimu7g01774 314 FunFam Polyubiquitin 3 162 237 - -
Vimu7g01774 314 SUPERFAMILY Ubiquitin-like 161 237 IPR029071 -
Vimu7g01774 314 FunFam Polyubiquitin 3 86 161 - -
Vimu7g01774 314 ProSitePatterns Ubiquitin domain signature. 188 213 IPR019954 -
Vimu7g01774 314 SMART ubq_7 162 233 IPR000626 GO:0005515
Vimu7g01774 314 SMART ubq_7 86 157 IPR000626 GO:0005515
Vimu7g01774 314 SMART ubq_7 238 309 IPR000626 GO:0005515
Vimu7g01774 314 SMART ubq_7 1 72 IPR000626 GO:0005515
Vimu7g01774 314 CDD Ubl_ubiquitin 162 237 - -
Vimu7g01774 314 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vimu7g01774 314 PANTHER UBIQUITIN 1 86 - -
Vimu7g01774 314 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vimu7g01774 314 SUPERFAMILY Ubiquitin-like 87 161 IPR029071 -
Vimu7g01774 314 FunFam Polyubiquitin 3 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01774 Vimu-Chr7 16286771 16287916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01774 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.09e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01774 K08770 - vra:106768219 602.823