Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01773 ATGAAAAACCACAGTTTTTCTTCAGACATTGATGCGTTTAAGCAGCAGAAGAAAAAGGCAGGGCGGAAGAAGATTGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTAACATTCTCGAAAAGAAGAACAGGGCTATTCAAAAAAGCGAGTGAACTCTGCATTTTGTGCAATGTCAATATAGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCGGTCATCCAGACTTCGAGGGCATTGTTGAAAGCTACCTTAAAGGTTCCAAAGTGTTTGATCCACCGGAGTCAAGGGAGAGATCAGTGTCGTATGAAGAGTGCAACAAGCAATACGAGGAGGCAATGAAGAACTTGGAGTTGGAAAAGAAGAATCTCAGAGAAACTGAAACTCTGGTTAATAAGGGGTGTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTCAAAGTGAGTTAGAACAGTTTATGGTATCTGTTTATGAGTTGAGGAGAAAATTAGCTGAAAGGGGTGGTGAATTGTTGATGCAATCAATGATATAG 552 0.4058 MKNHSFSSDIDAFKQQKKKAGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDFEGIVESYLKGSKVFDPPESRERSVSYEECNKQYEEAMKNLELEKKNLRETETLVNKGCNRRWWEDPIDQMSQSELEQFMVSVYELRRKLAERGGELLMQSMI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01773 183 Gene3D - 33 98 IPR036879 GO:0003677|GO:0046983
Vimu7g01773 183 PANTHER MADS BOX PROTEIN 22 170 - -
Vimu7g01773 183 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Vimu7g01773 183 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Vimu7g01773 183 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Vimu7g01773 183 SUPERFAMILY SRF-like 21 92 IPR036879 GO:0003677|GO:0046983
Vimu7g01773 183 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Vimu7g01773 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Vimu7g01773 183 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Vimu7g01773 183 Coils Coil 104 134 - -
Vimu7g01773 183 FunFam Agamous-like MADS-box protein AGL62 32 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01773 Vimu-Chr7 16283087 16283638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01773 17 168 Type I MADS-box Gene Family AT5G60440 40.123 7.90e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu7g01773 SRF-TF 7.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01773 - - vra:106766532 332.028