Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01770 ATGAATTCCAACTACGGCCAATCCAACACGAACAAATCCTCCTCCGTTTCCCTCAACAACTTCAATTTCGATTTCGATCTTGGCATCGGATCCAACCGTCCCAAGTCCCTCAACGACCAGAAAAACCCCAAAGCTTCCTATTCCACCACCACTACCACCACCTCTTCATATTCCTATCCATATTCCTCCACCCAACCCAACAAGCAACCCTCATGGACCCACCAACCCGCTCCCACTCAGACCACCGCCCTGCCCGGTGGGCCCCCCTCCATGGTCGGAGACATCTTCGGCAAAAGCTGGGGCACCACTCAACCTTCTGCCGCTTCCAAAAACATTGGGGTCGTTGATAAGAACCCTAATCTCTTCGGAGATTTGGTTAGTTCTGCTTTGGGTTCCAAGTCTACTGCTACCAATGTTCCTCTCAAAAACGCTACCCCAACCCCCAATAAAACCTCCTTTTCCATGGGAAACATGGCCAATTCTTTGCCCAAAACTGGTACCACGCCACAGAACAGTGCTGGTTGGGCATCGTCTTCTGGGGGGTTTAGCGTGAATGCCAACAAGACCCCCAATCTTGGGGGTACTTCAATGCGAAACATGGGTAGTGGAATTGGAACCAGTTCTAATAACAAGGATCCGTTTAGTTCTTTGTCTGGTTTTGGATCCAAGCAGTCTGCTACTCTTAATTCAGCTGCCAAAGGGCCGAAGGTTGCATCCGGGGATGATGGTTTTGGAGATTTCCAAAATGCTTCCAAATCGAGTTCGGATGGTTTTGGAGACTTTCAAAATGCTTCAAAACCAAGCTCACATGCGTTTCCATCTGCTGCTTCTCCTGGGACTGATTTCAATTTTGCTGGATCTGCCGCTTCCACTCAGAGTCCTGTTCAGGGATCAGGTGGTAGTGCAATGGACATGTTTTTCACGGCGGCTTCCTCGCCCGCGGTTGGAGGTGCTGCTTCGGCCTCTGATGGATTTGGTGGACAGGACGATTGGGGTTTGGATTCGGAGTTTGGTGGGGGAGGCCATGATGTGGGTGGCACCACTACTGAGCTCGAGGGGCTGCCTCCTCCTCCTGCTGGGGTCTCTGGTTCCACTGCAAAAGGCAAGGGGATGGACAACTACAAGCAGGGACAGTTTGCTGATGCTATTAAGTGGTTTTCGTGGGCCATTGTTCTTCTAGAGAAAGCTGGGGATGCCACCGCCACAGCTGAGGTTTTGTCATGCAGGTCTTCATGTTACAAAGAGGTCGGGGAGTATAAAAAGGCAGTAGCAGATTGTACCAAGATTCTTCAAAATGATGAAAGCAACGTAGCTGTCCTGGTACAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTTAGGACTGTGCTGAAGATTGATCCTAGTAATAGGATTGCTAGAAGCACCGTTCACCGGTTGGCTCAGATGGCTGGTTAG 1458 0.5027 MNSNYGQSNTNKSSSVSLNNFNFDFDLGIGSNRPKSLNDQKNPKASYSTTTTTTSSYSYPYSSTQPNKQPSWTHQPAPTQTTALPGGPPSMVGDIFGKSWGTTQPSAASKNIGVVDKNPNLFGDLVSSALGSKSTATNVPLKNATPTPNKTSFSMGNMANSLPKTGTTPQNSAGWASSSGGFSVNANKTPNLGGTSMRNMGSGIGTSSNNKDPFSSLSGFGSKQSATLNSAAKGPKVASGDDGFGDFQNASKSSSDGFGDFQNASKPSSHAFPSAASPGTDFNFAGSAASTQSPVQGSGGSAMDMFFTAASSPAVGGAASASDGFGGQDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGVSGSTAKGKGMDNYKQGQFADAIKWFSWAIVLLEKAGDATATAEVLSCRSSCYKEVGEYKKAVADCTKILQNDESNVAVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTVHRLAQMAG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01770 485 Gene3D Tetratricopeptide repeat domain 363 484 IPR011990 GO:0005515
Vimu7g01770 485 MobiDBLite consensus disorder prediction 33 86 - -
Vimu7g01770 485 SMART tpr_5 403 436 IPR019734 GO:0005515
Vimu7g01770 485 SMART tpr_5 363 396 IPR019734 GO:0005515
Vimu7g01770 485 SMART tpr_5 437 470 IPR019734 GO:0005515
Vimu7g01770 485 MobiDBLite consensus disorder prediction 28 103 - -
Vimu7g01770 485 MobiDBLite consensus disorder prediction 231 275 - -
Vimu7g01770 485 PANTHER OS03G0340700 PROTEIN 1 484 - -
Vimu7g01770 485 SUPERFAMILY TPR-like 367 477 IPR011990 GO:0005515
Vimu7g01770 485 MobiDBLite consensus disorder prediction 246 275 - -
Vimu7g01770 485 ProSiteProfiles TPR repeat profile. 437 470 IPR019734 GO:0005515
Vimu7g01770 485 MobiDBLite consensus disorder prediction 163 210 - -
Vimu7g01770 485 MobiDBLite consensus disorder prediction 318 366 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01770 362 482 Calmodulin-binding Proteins AT3G25230 27.692 6.16e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01770 - - pvu:PHAVU_003G107800g 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01770 7 16269066 16273590 Vimu7g01770 7 16269066 16273590 ECH