Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01767 GCTGCGGAAATAAGGGACCCACGCAAGGGCGTTCGCGTGTGGCTCGGCACCTTCGCCACCGCGGAAGAAGCCGCACGCGCCTACGACACCGCCGCCGTACGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCGACCATCACCGCCACACATCCAATACCAACAACAACAACCCGTGCCTCAGCTCCGAGTCGACTCAGTCGTGTTATCAACCCAGTCTTAATAACCTCGACCACGATCCTCAACAACTCGCGCAACAGATTTCCAACCTGGAATCGTTTCTTGGTTTGGAGCACGAACAGCTTCCTATGCAGCCGCTGCCACTTCCCGAGTGGGACCCGCTCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGAAACGCTGCCATGTTTCAAATTAGCCTCTGTAAAATTTAATCTTACATGCTTTTCTTTCTGTTCCTGA 447 0.5481 AAEIRDPRKGVRVWLGTFATAEEAARAYDTAAVRIRGDKAKLNFPDHHRHTSNTNNNNPCLSSESTQSCYQPSLNNLDHDPQQLAQQISNLESFLGLEHEQLPMQPLPLPEWDPLTTSFCPTTTSSETLPCFKLASVKFNLTCFSFCS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01767 148 SMART rav1_2 1 51 IPR001471 GO:0003700|GO:0006355
Vimu7g01767 148 Gene3D AP2/ERF domain 1 46 IPR036955 GO:0003700|GO:0006355
Vimu7g01767 148 MobiDBLite consensus disorder prediction 49 64 - -
Vimu7g01767 148 MobiDBLite consensus disorder prediction 43 64 - -
Vimu7g01767 148 Pfam AP2 domain 8 37 IPR001471 GO:0003700|GO:0006355
Vimu7g01767 148 SUPERFAMILY DNA-binding domain 1 46 IPR016177 GO:0003677
Vimu7g01767 148 CDD AP2 1 47 IPR001471 GO:0003700|GO:0006355
Vimu7g01767 148 ProSiteProfiles AP2/ERF domain profile. 1 45 IPR001471 GO:0003700|GO:0006355
Vimu7g01767 148 PANTHER DNA-BINDING DOMAIN 1 75 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01767 Vimu-Chr7 16260868 16262386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01767 1 98 AP2-EREBP Transcription Factor Family AT3G16770 49.219 2.40e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g01767 AP2 7.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01767 K09286 - psom:113360897 88.9669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01767 7 16260868 16262386 Vimu7g01767 7 16260868 16262386 ECH
Vimu7g01767 7 16260868 16262386 Vimu10g00162 10 951459 953425 PCT